| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0200 |
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| Symbol | |
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| ID | 4171746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 238178 |
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| End bp | 240091 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053199 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_659786 |
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| Protein GI | 109896531 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTACTGC TGGTATGCTT TTCGTCTCAA GCAACGACAA CTCTTTCTTC AGCAGAGCAA
AAACTACAAC ATCAGCGTGA AATCTTCGTC GAAGCAGAAT CATTGGCTAA CAACCCACAA
AGCGCTGATT ACCAAAGGCT GGTTGCGCAA TTAGTAGACT ATCCTTTGCT ACCGTATGTC
CAGTTGAAAG CATTGATGAA CAACATCAAT AGAAAAAATG GTCCAGAAAT AGAAGCCTTC
TTAGGGAAAT ATGAAAATAC CCCGCTGGAC CGCTCATTAC GCAAAAAATG GCTGCAATAT
TTGGCCAAGT CGCAACGCAA AACGGAATTT TTGGCCGCGT ATACTAATAT CGGCAACGCC
CAACTAGCGT GTAAAAACAT TGAATATCGC TTGTCAGACC CTGCTGAGCG CAAAGTCGCG
TTAACCGAAG TACCCAGATT ATGGATTGTG GGTCAGTCAC AACCCAAGGA ATGTGACTAT
GTATTTCGTG AATGGAAAAA AGAAGGTTTA CTCACCAAAG ACATGGTTTG GCAGCGCTTA
GTACTTGCTG CCACTAGCGG CAAACACACG CTGGTGCCTT ATTTACAAAA ATTGCTACCA
GAAAACGAAC GCTATCTAGC TGACTTGTGG CTAGCAGTGC GCCGCGACGC TAGCTACGTG
AGCCGTAGCT CGAAATTTCC TCACAAGTTA GTCAGCAAAG AAACCCAAAT ACTGATTTAC
GGTTTAAAGC GCCTAGCGTT TAGTCAGCCT GATTTAGCCT TAAAAAGCTG GTACGCGCTA
GAGAAACGGT TTGCTTTTAG CGCTCCCCAG CGCAAGGCGA TGACCGAGCG CTTCGCTATT
GCTTTGGCGG TTGCTGATCA CCCGCAAGCT GATTTGTGGC TTGATAAAGC CAGTGCAGAT
TCCACCGACA TCGAATTATT TCGCTGGCAT TTGGCCCACG TATTACGCCT TGGCAACTGG
CAACATGCGC TCGAATTAAT TGAATCAGCC CCGTCTGGCA TCACCCAAGA TTTAGCCTTT
CAATATTGGC TTGGCCGCAC TTACGAGCAG TTAGAGGCCG GTGATTTAGC ACAACAGACC
TTTAATAAAT TAGCGGATCA ACGTCACTAC TACGGCTTTA TGGCCAGCGG TAAACTGGCT
AAGCAGCCTA GCTTGCATGA CAAAACCTTA AATTTTAGCC CTGAGCAATT ATTGGAGGTT
GCCAATATGC CTCAAGCCAA ACGCGCCTAT GAGTTTTTGC AACTTGACCG AAGCTTGAGT
GCAAGGCGCG AATGGTACGA CTTACAACAA GGGTTAAACG AACAACAAAG TTTGATGGCG
GCCGTACTGG CAGACAGCTG GAAGTGGCAT GACCAAGCGA TATTCACTTT TGCCCGAGTA
GGCTATTTAG ACGATTTGGA GCGACGCTTT CCAATCGCCT TTGATAAAAG CTTAATCAAC
AGCGCCAACA AAAACCAAGT CGACCCCGCA TGGGCCTTTG CTATTGTGCG CCGCGAAAGC
TCGTTTATGC CTGATGCTAA TTCACACGCG GGCGCCCGGG GGCTGATGCA ACTTATGCCA
GGCACGGCTA ACTACTTAGC CAAAAAGAAA GTGGGCGGCA GCAGCCTATT TGACCCTGAG
CAGAACGTGG CTTTTGGCAC CCAATACATG CGCTACCTAA TGGATAAAAT GGACAATAAT
CCGGTACTCG CTACGGCCTC TTATAATGCC GGATGGCGCA AAGTATTGGA TTGGTTACCC
GAGCGCGATG CCGTACCCAT GGATATCTGG GTGGAAACGA TTCCTTACAA AGAAACCCGT
AACTATGTTA AAGCCGTAAT GGCTTATAAA CAAATATACG CCCAGCGCTT AGGCCAACCC
AGTCAGGTGT TTAAAGAGTT GGTGGACATG CAGATAGCCC CTATACAGCA ATAA
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| Protein sequence | MLLLVCFSSQ ATTTLSSAEQ KLQHQREIFV EAESLANNPQ SADYQRLVAQ LVDYPLLPYV
QLKALMNNIN RKNGPEIEAF LGKYENTPLD RSLRKKWLQY LAKSQRKTEF LAAYTNIGNA
QLACKNIEYR LSDPAERKVA LTEVPRLWIV GQSQPKECDY VFREWKKEGL LTKDMVWQRL
VLAATSGKHT LVPYLQKLLP ENERYLADLW LAVRRDASYV SRSSKFPHKL VSKETQILIY
GLKRLAFSQP DLALKSWYAL EKRFAFSAPQ RKAMTERFAI ALAVADHPQA DLWLDKASAD
STDIELFRWH LAHVLRLGNW QHALELIESA PSGITQDLAF QYWLGRTYEQ LEAGDLAQQT
FNKLADQRHY YGFMASGKLA KQPSLHDKTL NFSPEQLLEV ANMPQAKRAY EFLQLDRSLS
ARREWYDLQQ GLNEQQSLMA AVLADSWKWH DQAIFTFARV GYLDDLERRF PIAFDKSLIN
SANKNQVDPA WAFAIVRRES SFMPDANSHA GARGLMQLMP GTANYLAKKK VGGSSLFDPE
QNVAFGTQYM RYLMDKMDNN PVLATASYNA GWRKVLDWLP ERDAVPMDIW VETIPYKETR
NYVKAVMAYK QIYAQRLGQP SQVFKELVDM QIAPIQQ
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