| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0188 |
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| Symbol | |
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| ID | 4171734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 220554 |
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| End bp | 224459 |
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| Gene Length | 3906 bp |
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| Protein Length | 1301 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053187 |
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| Product | hypothetical protein |
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| Protein accession | YP_659774 |
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| Protein GI | 109896519 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGTCAG GCTCTTTTTA TGCCGCTTAT ATTATTAAAA AACTATGGAC TTGCGCTGCT
ATTTTGTTGG TGCTGGTGGC CGTGGCCATC AGTGTTGTGC GTTACACGTT GCCCTACATG
GACGGGCAAA AACATCGTTT AGAGCAATGG GTCGAGGGTC GATATGGGGT CGAAATTAAC
ATCGGCACTA TCACGGCGCA GTGGAAAGGT GCAGGCCCAG CGATTGTGCT TGAAGACCTG
CAGCTGGTAC AAAATGCTCA ATCTCCCCTT AGTTTAGATA TTAAAAAAAC CATCATCGAA
CTGGATTTTT GGGGCTCAAT ATTGGGGCGT CAGATCCGCT CTCAGCGCTT TGACTTAAAC
GGCCTGAACG TTAAGGTTGA TGTCACTTTG ATGAACAAAG AAGGTAGTGA CTTTCCTGTT
GTATCGGCCT TGAAGCAGTT GTTTCTAGAG CAACTTCAAT CGTTTTCTGT AAGTGATAGT
CAGTTTGAAA TCAGCACCGC GCACGACCAG CAAGTCGTGT TGGTTAATCA GTTGCTATGG
AGTAACAGCG GGCTTCATCA TCAAGGCGTC GGTGAATTGC AGGTCGAAGA GCTAGCAAGT
AACTCCGCGT CATTTACCTT AGACCTACGC GGTGACAAAG ACTCCCTTAA CGGTACTTTT
TATGCCAGAG CGCACGAAGT AGATTTATCC CCTTGGATAA ATCAATGGCT GGCGACCCGT
TACGACTTGG TTGAAAGTCG GGGCAACTTT GTTGTGTGGG CGAGTATCCA AGACGGCGAC
ATCAAAAATG CTCAGCTTGA TTTGGCCGAT AGCCGTTTTG TATGGCAAAA CGAAGATGCC
GAAATCACAG CAGCGATATT GGGGGGGCAA CTCAATGCTG AGCCCAGTAA CGACGGTTGG
GTTTTCAATT TATACGACCT TGCCTTACAA GCTAATGAGC GCACGCAAAC ATCCAATTGG
TATGGCGAAA TTAACCACCA AGGGCAAGTA CATATACAAA ATGCAGACCG AGTAGACTTA
TCCGCTATTA CCCCCTTGCT ACCACTTGTT TTGAACCCGG TCGATTTCAA CCTTCTAAAG
GACCTTTCGC CTAATGCCAC TTTGAACAAA TTCAATGTGA AATTTGATAA ATCGGATACC
TATGCCCAAG TGAATCTAAG CCAAATTGGC TGGCAGCAAA GCGGCAATGT GCCTGGGGTA
GATAATCTTG AGTTAAACGT AAACTGGCAC AACGACATGG GCCGAGTGCA AATTCGTGGG
CGCAATTCCC AGTGGAAAAT GGACAACATA GTCGACCGAA ATATTGAATT TCAGCGGGTT
GACCTTGATA TGTATATTCA GTCTCTTGAC CAAGGTATCG AACTATATGC GCCGAAACTG
AAGTTAGGCA ATGATTGGCT AAACATAGAT CAACACCTGC GGTATGAAAG TAACACCGGT
TATCTTGCGC TCAGCGGCAC GATTAGTGGA TTAGATGTAG CACAAGTGAA TCAACTTTTA
CCTGGTGTCG TGATGGGTAA AGATACCAAA GCGTATTTGC AAAGAGCCCT TAAGGCTGGG
TACGTTAACG GCGCAAAAAT TCTTTGGAAT GGAGAATTAA GCCAGTTCCC TTACGCTAAT
AATCAAGGTG TATTTCAAAT TACTGTTGGG GTGGAAGACG CGAGTTTCGA GTTCGCTGAA
GATTGGCCGC AACTAAATGA CTTGAACATT GACCTGTTGT TCGAAAACAA AGGTTTATTT
ATGCAAGCGA ATGCAGGCAA GTTACTAGAT GTAAACTTGT CTGGGTTATC AGCAGATATA
CCAGATCTGG ATGTGGGAGC CGTGCTAACC ATTGATGCGC AAGGCTCAGC TCTTGGCACT
CAGGTTAACG AGTTAATGAA ACGCAGTAGT CTTGCCAGCA GTTTGGGCAA GGTCCTTGAT
GAAGTGCAAG TCAGTGATGC GCTTAATGTA GACCTGAATT TGGTTATTCC TCTATCAGGC
AAGGATGTTG TGGCAAGCGG CGTGGTGCAC TTAGCTGACA ACCGTGTTTA TGTACCTCGG
GTTGACATGA ATTTAACCCA CGCTAAAGGG CAGGTGTCTT TTAAAAATGA AGTGGTTGAT
ATGAGCGGCT TGCAAGCGCA ACTATTTGAC CAGCCAGTTG AGGTCGATTT TAGTGGTCGC
CAGGGCAAAG AGGGCTACTT AGCGAGTATC GATCTACTAG GCGATTGGAA GGTTAAACCC
TTGGTTAAAC GGTTCGTGCC TAGTTTGGCC AGTTATTTAG ATGGTAAGTC GCCGTGGCAA
GCGAATGTCA GGCTGACCTT GCCCGAAGAT GGCTTTCGTT ATCAGGCCAG CGTGTATTCT
GGATTACAGG GCATTGGCTC GCAGCTGCCT GAACCGCTTA ACAAAACGGT GAATCAAAAC
AAGCCGCTTA CCTTGGATAT TTCCGGCGAT GAGACTGCAT CAACGGTCAA TTTGAAAATG
GGTTCACAAG TCAACTTTGA TGGGGTATTG CCTTATGAAA CGATGCAATT TTCCCGGGCC
CATTTAGCCA TAGGTGAATC ATTGGATATG CCCATGGGGT TAGGTTTCAG TGTTGCTATG
AACTTACCCT ACGTGAACAT TGATAATTGG TATTATGCTA TTTCTTCTTT ACTGCATGAT
TTAACAGGCG ATGAATCAGG TATCGCTTCA GACCCCAACA AAAAGCCCTT TATTGGCGAG
CCACAGCGTA TTTTTCTAAA TGCTGATAGT GCCACTGTGG CTTCTCAGCA ATTAACAGAC
TTAGAAGCTG TCACCAAAAA CACTAATGAC AGTTGGCAAA TAAACGTCAA CGCCAAGCAA
GTCAGGGCCA ATGTATCACT CTATAAAGAC TGGTTAGCCA GAGGCATTAC TATTTCAGCT
GATTACCTAG ATTTGGCCGG TTGGGAGAAA AGCGAAGGCA AGGCTGTGGA GTTTGAACCT
AAGCTCGAAA CCTTACCGCC AGTCGAGTTT TTATGTGAAC GCTGTCGTTT TGAAGACAAA
GACTTGGGTA GAGTCGACTT CAAATTATCA CGCGCCGCCA ACGGTATGCA CATTGATTCA
TTGCGTTTAA ATAACGACCA CGGATTGTTT TACGCAAGTG GTGATTGGTT GTTTACCCCA
CGCGGCAACC AAACCAAGAT CGAAGGTGAA TTTAGCAGTT CAGACTTTGG TTTATTTCTA
AAAGGTTTCG AGTTTGACTC AGGTATTAAA GACTCAAAAG CCTCAGCTAA ATTCAATTTA
GATTGGCAGC GCGCCCCGTT TGAGTTTGAT TTTGCTACCT TAAATGGCGA TATTGATTGG
CGTTTGAGCG ATGGTTATCT CACTGAGGTA ACAGACAAAG GCTCACGGAT ATTTAGCTTG
TTGAGCTTGG AGTCGCTGGT GCGAAAGCTG CGCCTAGACT TTCGTGATGT ATTTGCCCAA
GGCTTCTTTT ACGACAAAAT GAAAGGCAGT TTTCAGGTGG CCCAAGGCAC AGTCGATACC
CGCGATACCG TGGTAGATGG CGGCGCGGGT GAAATCACTA TGCAAGGGTA CACCAACTTG
AACACCCGAG AGGTAAACTA CAACATTGCG TTTGCCCCTA AAGTGACATC CAGTTTGCCG
CTTATCGTCG CTTATATGGT TAATCCAGCA ACCGCATTGG CCGCTTTAGC ACTGGATCAG
GTACTGACGT CAGCCAAGGT CATATCCAAT ATTAAATTCT CTTTAACGGG CACGTTAGAC
GACCCTAAAT TAGAAGAGTT GGAGCGTGAC AGTAAAGAAA TTCGCTTGCC GGCACAAACT
GCCCCAGCGC CGGTTGATAC GCCAAATGTT GGCCTTGCAA TAGACCCTAA TGGCCACAAT
ACAGATATAA GCTTCCCACA AGAGATAGAT CAAGAGCGCG TAGCGCTGGA GGTATCCGAT
GGCTAA
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| Protein sequence | MRSGSFYAAY IIKKLWTCAA ILLVLVAVAI SVVRYTLPYM DGQKHRLEQW VEGRYGVEIN
IGTITAQWKG AGPAIVLEDL QLVQNAQSPL SLDIKKTIIE LDFWGSILGR QIRSQRFDLN
GLNVKVDVTL MNKEGSDFPV VSALKQLFLE QLQSFSVSDS QFEISTAHDQ QVVLVNQLLW
SNSGLHHQGV GELQVEELAS NSASFTLDLR GDKDSLNGTF YARAHEVDLS PWINQWLATR
YDLVESRGNF VVWASIQDGD IKNAQLDLAD SRFVWQNEDA EITAAILGGQ LNAEPSNDGW
VFNLYDLALQ ANERTQTSNW YGEINHQGQV HIQNADRVDL SAITPLLPLV LNPVDFNLLK
DLSPNATLNK FNVKFDKSDT YAQVNLSQIG WQQSGNVPGV DNLELNVNWH NDMGRVQIRG
RNSQWKMDNI VDRNIEFQRV DLDMYIQSLD QGIELYAPKL KLGNDWLNID QHLRYESNTG
YLALSGTISG LDVAQVNQLL PGVVMGKDTK AYLQRALKAG YVNGAKILWN GELSQFPYAN
NQGVFQITVG VEDASFEFAE DWPQLNDLNI DLLFENKGLF MQANAGKLLD VNLSGLSADI
PDLDVGAVLT IDAQGSALGT QVNELMKRSS LASSLGKVLD EVQVSDALNV DLNLVIPLSG
KDVVASGVVH LADNRVYVPR VDMNLTHAKG QVSFKNEVVD MSGLQAQLFD QPVEVDFSGR
QGKEGYLASI DLLGDWKVKP LVKRFVPSLA SYLDGKSPWQ ANVRLTLPED GFRYQASVYS
GLQGIGSQLP EPLNKTVNQN KPLTLDISGD ETASTVNLKM GSQVNFDGVL PYETMQFSRA
HLAIGESLDM PMGLGFSVAM NLPYVNIDNW YYAISSLLHD LTGDESGIAS DPNKKPFIGE
PQRIFLNADS ATVASQQLTD LEAVTKNTND SWQINVNAKQ VRANVSLYKD WLARGITISA
DYLDLAGWEK SEGKAVEFEP KLETLPPVEF LCERCRFEDK DLGRVDFKLS RAANGMHIDS
LRLNNDHGLF YASGDWLFTP RGNQTKIEGE FSSSDFGLFL KGFEFDSGIK DSKASAKFNL
DWQRAPFEFD FATLNGDIDW RLSDGYLTEV TDKGSRIFSL LSLESLVRKL RLDFRDVFAQ
GFFYDKMKGS FQVAQGTVDT RDTVVDGGAG EITMQGYTNL NTREVNYNIA FAPKVTSSLP
LIVAYMVNPA TALAALALDQ VLTSAKVISN IKFSLTGTLD DPKLEELERD SKEIRLPAQT
APAPVDTPNV GLAIDPNGHN TDISFPQEID QERVALEVSD G
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