| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0180 |
|---|
| Symbol | |
|---|
| ID | 4174044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 209928 |
|---|
| End bp | 210770 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638053179 |
|---|
| Product | prepilin-type cleavage/methylation |
|---|
| Protein accession | YP_659766 |
|---|
| Protein GI | 109896511 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAC GACATGCATT AGGCCGACAC AAGGGCTTTA CTTTGGTTGA GCTGGTCACA
GTGATTATTG TGCTGGGTAT TGTGTCTATT GGTGTCACCA GCTTTATTCG CTCTGGTGTG
CAGATTTTTA ATGATGTGAG CGAGCGAGAT GAACTCTTAA GTCAAAGTCG TTTTGTGATT
GAGCGCTTAA ATCGAGAGTT GCGCAGTTCA GTACCTAATA GCGCCCGCGT CAAACTAGAA
AATAGCGCCC AGTGTTTAGA GTTTGTGCCT ACAATATGGG CCACTTATTA CACGCGTTTA
CCATTAGAAC CCTCTACAGA GCGAACAGTA AATACTGTTG AATTGGGTGA TGCTAATGAT
CAGTTTTCAA TCACAAGTGG TGATATGGCT GTGGTTTATC CTACCGATAG TCAAGATGTG
TATGACGTTA ATGAGGAAAA GCGACGGACC GTTTTATCTT GCACTGACAG CGGTGATGGT
GATTGCACGA CAAATGATAG CGCTGAGCAT TTAGCGACAT TAACCGTCGA TGGTGCATTT
GCCGATGTGT CTCCTGCCTC ACGATTATAC ATAGTGCGAA ATGCAGTAAG TTACTGCATA
CGCGGAGGGA GCATGTTTAG ACATCAAGCC TCGATAGGAC AGGATCAAAC AGCGTTTACC
TTGGGGGGCA CCTTAATGGC TGAAAATATC GTCAATGATC TTGCCAATCC AGCAGAGCTG
CCATTCACCA TACAAAATGC TACCTTGAAT CGAAATAGCT TAATACAAAT CTTGCTCGCG
TTTGAGCTAA ATGATGAAAC AATTAACCTC AGTAGTGATA TTCATGTGCC CAATGTCCCA
TAA
|
|---|
| Protein sequence | MTSRHALGRH KGFTLVELVT VIIVLGIVSI GVTSFIRSGV QIFNDVSERD ELLSQSRFVI
ERLNRELRSS VPNSARVKLE NSAQCLEFVP TIWATYYTRL PLEPSTERTV NTVELGDAND
QFSITSGDMA VVYPTDSQDV YDVNEEKRRT VLSCTDSGDG DCTTNDSAEH LATLTVDGAF
ADVSPASRLY IVRNAVSYCI RGGSMFRHQA SIGQDQTAFT LGGTLMAENI VNDLANPAEL
PFTIQNATLN RNSLIQILLA FELNDETINL SSDIHVPNVP
|
|---|
| |