Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0176 |
Symbol | |
ID | 4174040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 207418 |
End bp | 208056 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638053175 |
Product | prepilin-type cleavage/methylation |
Protein accession | YP_659762 |
Protein GI | 109896507 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAAAT TAGCTAGATC ACAATACCAA ACCTTTGCTA AAGGCGGCGT TCAGCGTCAG CGAGGGTTTA CTTTAATTGA ATTGGTCATA GTCGTAGTTA TTTTAGGTTT GTTAGCTGCT ACCGCTTTGC CGCGCTTACT TGATGTGACG GAAGAGGCTG AAGATGCCAC GGTCGAGGGG GTAGCGGGTG GCTATGCAAC GGGTGTTGGC TTAGTGCGAG CTCAGTGGGA AATTGAAGGG CGGCCGAAGG AAAACTTTGC CACTAATCTA AGTTTTGTGA CCATCGACGA TATTCGTATT GGCGTTGATC AGGATACTGG ATATCCGACA GGACAACTTG ATACTGACAG CAGTACTGAA GATACACAGA TAAGCTTGTT AGATTGTGAG AGTATTTTTA ACTTAATCAT GCAAAGCGCG CCAACAATTT CATCTGATTG GAATGAACGT CCGTTTGATG ATCACCGTTA TTTTACTCGC CAAAGCGAAG GAAATGGCTC TGGGGGAAAT GATCTTTGTT ATTATTATTT AACCCAAACG ATAAAAAACG ATACCAATGA GCCTGTTGAC AATACTGCTG GCAATGGTTT TATATACGAT CCCCGTATCG GGCAAGTGAT TGTTTTTAGT AACAATTAG
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Protein sequence | MTKLARSQYQ TFAKGGVQRQ RGFTLIELVI VVVILGLLAA TALPRLLDVT EEAEDATVEG VAGGYATGVG LVRAQWEIEG RPKENFATNL SFVTIDDIRI GVDQDTGYPT GQLDTDSSTE DTQISLLDCE SIFNLIMQSA PTISSDWNER PFDDHRYFTR QSEGNGSGGN DLCYYYLTQT IKNDTNEPVD NTAGNGFIYD PRIGQVIVFS NN
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