| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0170 |
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| Symbol | |
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| ID | 4174034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 200081 |
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| End bp | 201733 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053169 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_659756 |
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| Protein GI | 109896501 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTA AGCTCATTAC GCTAAGCGGG TTTCTGCTGG TTTTAGTCGC CTGTCAGGCA
AAGCATGATA CTCAGCATTA TGAAAAATCG CTGGACGCTG CAATTGCCGA CACTGAAAAG
ACAGTTAGCC CTAAAAAGCA AGGTGTACCT GATTTACCTG ATGCCGTTCA TCAAACATTA
ATGCCAAGGT CAGAGCAAGC TGATGACGCG CTTTTTGGCG AACCTAAATT TGATATTAAT
GCTCAGCAAA TCGATGCAGT GAGCTTTTTC GCTGGAATCG TAGAAGATAC GCCTTTCAGC
GTGGCTATTC ATCCATCTGT GTCGGGTTTG ATTACCTTGA ATTTGAAACA GGTCACCTTA
GAGCAGATTT TCGATATCGT CACTGAGATA TACGGTTACG ATGTGCAACG CAGGCAAAAT
ATTTATCGTA TTTATCCCTC GGGCATGCGT ACAGAAACAT TCGCCGTGAA TTATTTATTA
ATGAAACGCG ACGGGGCGAC GCAAACCAGT ATTACCTCTG GCGGCGTCTC ACAAGCACAA
AACAGCAGCA GTAGTAGCTC AGGCAGTTCG CTGAACAGCT TTAGCGGCAA TTCTTCTTCC
GGTAGTTCAA ATAACTTGAA TTCAGGAAGT AATGGTAACG GCACCAGTAT TTCTACCAGT
ACTGAAACCG ATTTTTGGAC AGATTTGCTA GCATCATTGC AAGTCATGAT TGGCGCAGAA
GAGGGGCGTA GTGTGATGGT GATGCCCCAA GCCGGGTTGG TCACCGTGCG TGCTATGCCT
AGTGAAATAC GCTCGGTTAA AGAGTTTTTG GCGATATCAG AAGAACATGT ACAGCGCCAA
GTTATTTTAG AGGCGCGTAT TCTTGAGGTG TCACTGAGCG ATGGTTATCA GCAAGGTATC
AACTGGACAG AAGTATTAGC TAATAGTGGC AGTACTGACT TTCAATTTTC CACCACTGCA
GGCAGCTTAG GGGATGCTAT TTCTGCGTCA CTGGGGGGCA TTACAAGTTT GTCGTTCGTT
AATAAAGACT TCAGCGGCGT GCTGAACTTA TTACAAACCC AAGGCAATGT GCAGGTTTTG
TCTAGCCCTA GGGTCACGGC GATAAACAAT CAAAAAGCCG TGATTAAAGT GGGTGATGAC
GAGTACTTTG TGACTGACGT ATCCAGTCAA AGTACCGTAA CTGCGGCGAC TAGCTCCACC
ACACCGAATA TTGAACTGAC ACCGTTTTTT TCCGGTATCG CGTTAGACGT AACCCCGCAA
ATTGATGCAC AAGGTGGGGT GCTATTACAT GTGCACCCAT CTGTGATTGA AACCGAAGAA
CAAGAGAAGG TTGTGACCTT AAATGAAGAG CAGTTCGTGC TGCCTCTTGC CGCAAGTAAC
ATACGCGAAT CAGACACAAT TATTCATGCT CGCTCAGGTG AGATAGTCGT TATCGGCGGG
TTAATGCAAT CAATTATTTC TGAAACAGAG TCAAAGACAC CTTTACTAGG TGATATTCCG
CTACTGGGTA ATTTATTTAA AAACCGCCAA GAAACAGAAA CCAAAAAAGA ACTGGTTATC
TTGCTTCGTC CCACAGTGGT AGGCGCAGAC ACGTGGCGCC AGCAGTTGAT CCGCAGCCGT
AATCAAATGG CTGACTGGCT ACACGTGGAC TAA
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| Protein sequence | MDFKLITLSG FLLVLVACQA KHDTQHYEKS LDAAIADTEK TVSPKKQGVP DLPDAVHQTL
MPRSEQADDA LFGEPKFDIN AQQIDAVSFF AGIVEDTPFS VAIHPSVSGL ITLNLKQVTL
EQIFDIVTEI YGYDVQRRQN IYRIYPSGMR TETFAVNYLL MKRDGATQTS ITSGGVSQAQ
NSSSSSSGSS LNSFSGNSSS GSSNNLNSGS NGNGTSISTS TETDFWTDLL ASLQVMIGAE
EGRSVMVMPQ AGLVTVRAMP SEIRSVKEFL AISEEHVQRQ VILEARILEV SLSDGYQQGI
NWTEVLANSG STDFQFSTTA GSLGDAISAS LGGITSLSFV NKDFSGVLNL LQTQGNVQVL
SSPRVTAINN QKAVIKVGDD EYFVTDVSSQ STVTAATSST TPNIELTPFF SGIALDVTPQ
IDAQGGVLLH VHPSVIETEE QEKVVTLNEE QFVLPLAASN IRESDTIIHA RSGEIVVIGG
LMQSIISETE SKTPLLGDIP LLGNLFKNRQ ETETKKELVI LLRPTVVGAD TWRQQLIRSR
NQMADWLHVD
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