Gene Patl_0161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0161 
Symbol 
ID4172648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp192790 
End bp193455 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content41% 
IMG OID638053160 
ProductTetR family transcriptional regulator 
Protein accessionYP_659747 
Protein GI109896492 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAATA TTAGGAAGGG GACAGGGGAG TCTCGTCGCG GTAAAGAAAC TCTTTTACTG 
ATACTAAATT CCGCTAAAAC CATATTGATT GAGCAAGGCT ATAGTAAGTT GTCTATGCGT 
AAGGTTGCTG TGGGCGCGCA AATTAGCGTG GGAAATTTAC AATATTACTA TCCAAGCAAG 
AATGACTTGC TCAAAGATAT GCTCGATCAC AGCATTGATG AGTTTATGGA TGAATTTGAA 
CGATTAAGAT TGGGGACGAA TAACGATCCT GAGCTGCATC TCAAATCCAT TATCAATTTT 
ATCGTACTTG ATTTAGGCAA CCCCACAACG ACTACGTTTT ATCCTGAGTT ATGGGCCTTA 
GCAAATCACG ATGAATATGC TGACAAATTA ATGGATGAAA TATACGCTCG CGTGCGCGTA 
CCTCTTGAAG ATAGCATTAT GCGGCTAAAC CCAAGGCTTG ATTTTGAGCA GGTGCAGAAA 
GTGGCTTTGT TTATTTCTTC ATCCATGGAA GGCATGACCA TGTTCGTTGG CCACGGCAAA 
GTGTGGAACG ATTCTATTCA ACACATGGCG AACATAGCAA CAATGAGCTT TCTTCAGTTG 
GTCAAAAATA TTACGCCTGA AGATATTCAA GAGAATAGTT TTATACTTGC CGCTGACAAA 
GGGTAA
 
Protein sequence
MRNIRKGTGE SRRGKETLLL ILNSAKTILI EQGYSKLSMR KVAVGAQISV GNLQYYYPSK 
NDLLKDMLDH SIDEFMDEFE RLRLGTNNDP ELHLKSIINF IVLDLGNPTT TTFYPELWAL 
ANHDEYADKL MDEIYARVRV PLEDSIMRLN PRLDFEQVQK VALFISSSME GMTMFVGHGK 
VWNDSIQHMA NIATMSFLQL VKNITPEDIQ ENSFILAADK G