Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0155 |
Symbol | |
ID | 4172642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 186821 |
End bp | 189145 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053154 |
Product | TonB-dependent receptor |
Protein accession | YP_659741 |
Protein GI | 109896486 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0214646 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAACAC TAAACTATTC GAGCATATCT ACCGCGATCA CGCTTGGCCT CGCCAGTATA AGTGGCTTGG CCAGTATTCG CGCCCACGCT GATGTATTAG AAGTCATAGA AGTGACCGCA CAAAAACGCA CCCAAAGCGT TCAAGAAGTG GGCATTTCAA TCACCGCGTT CAGTGGCGAT CAAATTGACG CATTAGGCTA CGATAACGCC CAAGAAGTGA CCGCCATGGC GCCAGGGGTT ACAGCCATTC AGCCCAATGG CCCTTCCGCG TTTTACATCA ATATTCGTGG TGTGGCGCAG AATGACTTTT CGGGTGATCA TCAAGAATCC CCCGTGGCAG TGTACCTAGA TGAAGCGTAT ATCAGTGCCT CTTCAGGGGC AGGATTCCAG TTATTTGACA TCGAGCGAGT CGAAATACTC AAAGGGCCAC AAGGCACCTT ATTTGGCAGA AATGCGACGG GGGGCTTGGT ACATTACATA TCACGTAAAC CCACCGACAC CTTCGAAGGA TACGGTAAGG TTACCCTAGG CAGCTATAAC CAAGTCCTCA CCGAAGGTGC CATAGGCGGC GCACTCACTG ACACCCTCTT CTCTCGCTTC TCATTCACCA CCAATAATCA CGACCCCTAC ATCAACAACA CTTTAGGTAA AGATCTCAAC AATGGCGACG ACTGGGCTGC ACGCCTACAG TTTTTGCTTG AAGTCACAGA TGACGTGGAA TGGTTAGTCA GCGCTAGACG CGGCGAACAA GATATCGACA GCGGTTTTTT TGAACACTCC AGTGCTCGCC TCAATCCAGC CACAGGCTTA GGAGAGCATT TTGACGGGCC TAATTTAACT ACCTCAGCTT ATCAAGAGCC TGATAACGGC GTGTACACAG GCTCATACGA CAGAATTGGC TTTAACAAAG TCGAAAGCCA AGGCGTCACC AGTAATTTAC AATGGGATTT TGGCGATATT CTGTTTACCT CCATTACTGA TATTTGGAGC TTAGAAAAAG ACTATATCGA AGATTCAGAC GCCTCCCCGC AAGATTACTA CAACTTTTTC CTGCAATCTG ATGTTGACCA ATTCTCACAA GAATTACGCC TAAATGGCCA AAGTGAGAAT ACCCGCTGGG TAACCGGCCT TTACTATTTA GATATCGACG GCACCTTTGC CAATGGTGGC GAAGTTCGCG GATTCGTTGA CCAGCTTGCT GGTGCAGGGG CAGGCACGGG GCCCGTAACC GGTGGCCCAG TGACGATTTG GACTCCTTTT GATACCACCA CAGAAACCTA CTCGGTGTTC GCTCAAGTGG AATACGATGT AAATGAACAA TGGACGGTGA TCGGCGGCTT GCGCTGGGCT AACGAAGAAA AGTCCATTGA TTACTCACAA AATTACGTTG AAATCGCCAA TGGTAGCAAC CCCTCTGCGG CTAATATTGT TAACCCGGAT CCCCTGGGAT TTGGTGGGCC GCTATTTGTG TTTAATGACG ACACCTTCGA CTTCGCTAGT CTTGACGATG ATTACGTCAC CGCTAAAGCC GAAGTCGATT TCAGCCCAGC TAAAGGCACT CTGTTTTATT TAAGTTATAA CCGCGGTATT AAAAGTGGCG GCTATAACGC ACCGTTGGAT ATCACCGATT TTCTCGACGG CAACCCAGAA ACTGGTGGCC CAGAAGAAAT GAAATTCGAC AAAGAAACGC TGCACGCCTA TGAGTTTGGT ATTAAACATC AGCTTAATTC AACTACCCGC GTAAACGGTG CGGTGTATTA CTACGACTAC GATGATTATC AGGCTTTTCG CTTAGAGGGC CTGACGACTT TTGTTTTCAA TACCGGTGCC AGTGTCAGCG GCGCAGAACT TGAAATCACC TCAAACCCTA TAGACAACCT CGACTTGTTA CTGGGCGTAA GTTACGTCGA CAACAACGTT GAAGACGCTT ATCAATTACC TAATGGTGAT TTAATCGACC GCCGTGCGGT GGTCACCCCA GAGTGGAATA TTAACGGCTT AGCCCGCTAT GGCTGGCAGC TCGCGGATGG CGAGTTAGCC GCGCAAATTG ACTTCGTCTA TATGAGCGAA CACTACTTTC AATTGAAAAA TTCCCCCGTG GGCGAGCAAA GCAGCTATGC CCTTTTCAAT GCCCGAGTGT CTTACACCTC TGATGATGGC AAATGGGTAT TCGCGGGTTT TGTAGACAAT CTATTAGACA AAGAATACCG CGTGATGGCC TTTGATCTAG CTGGCGGGCC CGAAGCAGGT GGTTTTGGCA TGGTCGAAAA TTATTATGGT AAACCCAGAT GGTGGGGACT CAGTGCCACC TATAAATTCG AATAA
|
Protein sequence | MKTLNYSSIS TAITLGLASI SGLASIRAHA DVLEVIEVTA QKRTQSVQEV GISITAFSGD QIDALGYDNA QEVTAMAPGV TAIQPNGPSA FYINIRGVAQ NDFSGDHQES PVAVYLDEAY ISASSGAGFQ LFDIERVEIL KGPQGTLFGR NATGGLVHYI SRKPTDTFEG YGKVTLGSYN QVLTEGAIGG ALTDTLFSRF SFTTNNHDPY INNTLGKDLN NGDDWAARLQ FLLEVTDDVE WLVSARRGEQ DIDSGFFEHS SARLNPATGL GEHFDGPNLT TSAYQEPDNG VYTGSYDRIG FNKVESQGVT SNLQWDFGDI LFTSITDIWS LEKDYIEDSD ASPQDYYNFF LQSDVDQFSQ ELRLNGQSEN TRWVTGLYYL DIDGTFANGG EVRGFVDQLA GAGAGTGPVT GGPVTIWTPF DTTTETYSVF AQVEYDVNEQ WTVIGGLRWA NEEKSIDYSQ NYVEIANGSN PSAANIVNPD PLGFGGPLFV FNDDTFDFAS LDDDYVTAKA EVDFSPAKGT LFYLSYNRGI KSGGYNAPLD ITDFLDGNPE TGGPEEMKFD KETLHAYEFG IKHQLNSTTR VNGAVYYYDY DDYQAFRLEG LTTFVFNTGA SVSGAELEIT SNPIDNLDLL LGVSYVDNNV EDAYQLPNGD LIDRRAVVTP EWNINGLARY GWQLADGELA AQIDFVYMSE HYFQLKNSPV GEQSSYALFN ARVSYTSDDG KWVFAGFVDN LLDKEYRVMA FDLAGGPEAG GFGMVENYYG KPRWWGLSAT YKFE
|
| |