| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0146 |
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| Symbol | |
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| ID | 4172633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 171926 |
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| End bp | 174754 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053145 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_659732 |
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| Protein GI | 109896477 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAGA TAGCTGTACG TGGCGCGCGC ACTCACAATC TAAAGAACAT CGATTTAGAT
ATTCCTCGAG ACAAACTTAC TGTCATCACC GGCTTGTCTG GCTCTGGTAA GTCTTCATTG
GCATTCGACA CCCTTTACGC CGAGGGGCAA CGTCGATATG TTGAGTCCTT GTCTGCCTAC
GCAAGACAAT TTTTATCCAT GATGGAAAAG CCCGACGTTG ATCACATCGA AGGCCTATCT
CCAGCAATTT CTATCGAGCA GAAGTCCACC TCTCACAACC CACGCTCAAC TGTGGGTACC
ATCACTGAAA TATACGATTA TTTGCGTTTG CTTTACGCTC GTGTGGGTGA GCCGCGTTGC
CCAACTCACC ATGTACCGTT AGATGCACAA ACTGTTAGCC AGATGGTTGA CCGCGTACTA
ACCATGCCTG CAGATGAAAA ACTCATGCTG TTAGCGCCTG TAGTTCAAGA CCGCAAAGGC
GAACATGTTA AAACCTTGGA AAGCCTTGCA GCCCAAGGAT TTATACGCGC TCGTATTGAC
GGCGAAGTGT GTGACTTATC AGATCCTCCT GAGCTCGATT TGCATAAAAA ACACAACATT
GAGGTGGTGG TTGACCGCTT CAAAGTGCGT GAAGACTTAG CACTTCGCTT GGCAGAGTCA
TTTGAAACCG CGCTGAACTT GTCCGCCGGC ACTGCGAAAA TAGCCTTTAT GGATGACCCG
CACAAAGAAG AAGTGGTGTT TTCATCTAAT TTTGCCTGCC CCCACTGCGG CTATTCAATG
GCCGAACTTG AACCAAGACT CTTTTCGTTT AACAACCCAG CAGGCGCTTG CCAAACTTGT
GACGGCTTAG GCACAAGACA GTTTTTCGAC CCTCACCGAA TTATCAGTAA CGACGAGTTA
AGCTTGTCAG GCGGGGCGAT ACGTGGTTGG GATAAGCGCA GTTATTACTA CTTCCAAATG
CTGCAAGCTG TGGCCGATCA CTATAAATTT GATCTGACTA CGCCTTTCTC TGAACTTGAC
GAAAAAGCCA AAGACATCGT GCTACACGGT AGTAAAGGCA CCTCAATCAA CTTCAAGTAC
ATAAACGATC GCGGCGATAT TATGGAACGT AAGCATCCCT TTGAAGGGAT TATTCCAAAT
ATGGAGCGCA GATACCGTGA AACAGAATCG AATGCTGTTC GCGACGAATT ATCGAAATAT
TTAAGCCAGC AACATTGTAG TAGCTGTAAT GGCACACGTT TGCGCCTTGA AGCACGCAAC
GTATTTATTG GCGACACACC ACTGCCGACC ATTACCGATA TGTCGATTGC CGAGTCGTTG
CAGTTTTTCA CTGACATTGA GCTGACAGGT AAACGAGAAA AAATCGCCGA TAAGATTTTT
AAAGAGATTA ACGACCGTCT GAATTTCTTG GTCAATGTTG GTTTAAATTA CTTGTCACTT
TCACGCAGTG CCGACACATT ATCCGGCGGT GAAGCTCAGC GTATCCGCCT TGCCAGTCAA
ATTGGTGCCG GCTTAGTTGG GGTAATGTAC GTACTGGATG AGCCATCAAT TGGACTGCAT
CAAAGAGACA ACGAACGCCT ACTGACCACG TTAGAGCATT TACGCGACTT GGGTAATACC
GTCATCGTGG TCGAGCATGA TGAGGATGCT ATTCGCGCCG CTGATTTCGT ACTCGATATT
GGTCCTGGAG CCGGTGTGCA CGGGGGCGAA ATTGTGGCCC AAGGCACTAT TGACGACATC
ATGAAAAGCG AGCATTCATT AACAGGTAAG TACTTATCTG GGCGTGAAGC AATCGCTATT
CCTGAGAAGC GCACTGAAAT TGACCAAGAT AAATGGATTG AAATGTGCGG CGCCACGGGT
AATAACTTAC AGGACGTAGA TTTACGCATT CCATTTGGTT TAATGACCTG CGTAACCGGT
GTGTCCGGTT CAGGTAAATC TACCCTCATT AATGATACTT TTTATCGTAT TGCTCATCGT
GAGCTAAATG GCGCGACAAC CGGTGAGCCC GCACCATACA AAACGATCAC TGGCATGGAC
ATGCTCGATA AGGTGGTTGA TATTGATCAA AGCCCGATTG GACGCACACC ACGTTCAAAC
CCAGCAACGT ATGCGGGTAT TTTCACCCCA GTGCGAGAGC TGTTCGCTGG TACGCAAGAA
GCGCGTTCAC GTGGCTACAA GCCAGGTCGA TTCAGCTTCA ACGTCAAAGG CGGCCGTTGT
GAAGCCTGTC AGGGTGACGG TGTGATTAAG GTCGAAATGC ACTTCTTACC TGACGTATAC
GTACCCTGCG ACGTATGTAA GGGTGAGCGT TACAACCGCG AAACATTAGA AATTCAGTAT
AAGGGTTTAA ACATCCATGA AGTACTGGAT TTAACCGTAG AAGACGCGCG CAAGTTCTTT
GATGTTATTC CTGCGATTGC CCGCAAATTA CAAACGTTGA TGGATGTCGG TTTATCGTAC
GTACGTTTAG GACAAGCCGC CACTACCTTG TCAGGTGGTG AAGCCCAGCG AGTCAAACTG
GCCAAAGAAT TATCTAAACG AGACACGGGC CAAACCCTAT ACATTTTGGA TGAGCCCACC
ACTGGTTTAC ATTTCCACGA TATAAAACAA CTTCTACAGG TATTGCATCG CCTACGCGAT
CACGGCAATA CTGTGGTGGT TATTGAGCAC AACTTAGATG TGATCAAAAC AGCTGATTGG
GTGATTGATT TAGGACCAGA AGGCGGCTCA GGCGGCGGGC AAATCATCGC TCAGGGCACA
CCAGAACAAG TTTGCGAAGT AGAAATATCT CATACGGCGC GCTTTCTTAA ACCTTTGCTA
TCAGTTTAA
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| Protein sequence | MDKIAVRGAR THNLKNIDLD IPRDKLTVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSMMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LYARVGEPRC
PTHHVPLDAQ TVSQMVDRVL TMPADEKLML LAPVVQDRKG EHVKTLESLA AQGFIRARID
GEVCDLSDPP ELDLHKKHNI EVVVDRFKVR EDLALRLAES FETALNLSAG TAKIAFMDDP
HKEEVVFSSN FACPHCGYSM AELEPRLFSF NNPAGACQTC DGLGTRQFFD PHRIISNDEL
SLSGGAIRGW DKRSYYYFQM LQAVADHYKF DLTTPFSELD EKAKDIVLHG SKGTSINFKY
INDRGDIMER KHPFEGIIPN MERRYRETES NAVRDELSKY LSQQHCSSCN GTRLRLEARN
VFIGDTPLPT ITDMSIAESL QFFTDIELTG KREKIADKIF KEINDRLNFL VNVGLNYLSL
SRSADTLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLTT LEHLRDLGNT
VIVVEHDEDA IRAADFVLDI GPGAGVHGGE IVAQGTIDDI MKSEHSLTGK YLSGREAIAI
PEKRTEIDQD KWIEMCGATG NNLQDVDLRI PFGLMTCVTG VSGSGKSTLI NDTFYRIAHR
ELNGATTGEP APYKTITGMD MLDKVVDIDQ SPIGRTPRSN PATYAGIFTP VRELFAGTQE
ARSRGYKPGR FSFNVKGGRC EACQGDGVIK VEMHFLPDVY VPCDVCKGER YNRETLEIQY
KGLNIHEVLD LTVEDARKFF DVIPAIARKL QTLMDVGLSY VRLGQAATTL SGGEAQRVKL
AKELSKRDTG QTLYILDEPT TGLHFHDIKQ LLQVLHRLRD HGNTVVVIEH NLDVIKTADW
VIDLGPEGGS GGGQIIAQGT PEQVCEVEIS HTARFLKPLL SV
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