| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0139 |
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| Symbol | |
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| ID | 4172166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 165887 |
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| End bp | 166570 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053138 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_659725 |
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| Protein GI | 109896470 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGCCTGACT TACCTTGGAA CAAAATTAAA ACCGTTTTGC TGGATATGGA CGGTACCTTG
CTCGATTTAC ACTACGACAG CCACTTCTGG TTAGAGCATT TGCCAAAGAA ATACGCTGGC
ATAAAAGGGA TTAGCGAGGA GCAAGGGAAA GAGTACATGA TGGCGGAATA TCGCCAGGTG
TTTGGCACCA TTGATTGGTA CTGTTTAGAT TACTGGGCGG ATAAATTACA GCTGGATATT
ATGCAAGCTA AACGCGAAGT TGAGCATTTA ATCAGCATGC GTGATGATAC CATTCCATTG
CTGGACGCCC TCAGAGAATC GGGTCGTGAG GTTATTTTGG TGACCAATGC ACACCCAGGA
AGTTTATCCC TGAAAATCGA ACATACCGCC CTTGATAGCC ATATCGACAC GCTTATCTCG
ACTCACGAAT TTGGGGTGAC TAAAGAATCT CAATTGCTTT GGCAGAAACT ACAACAGCGG
GTCGGTTTTG ATAGCAAACA CACGTTATTT GTCGATGACA GTTTGCCAAT TTTGCAATCA
GCCAAAGATT TTGGTATTGC CCACTTGCTA GCGGTAAGTA ATCCAGACAG CCAACTACCG
ATAAAAGATG TTACACAATT TTTGGCCACG AGTGACTACA GAACCCTGCT TGACGATATA
CGCAACGCTC CTTTTACGGG TTGA
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| Protein sequence | MPDLPWNKIK TVLLDMDGTL LDLHYDSHFW LEHLPKKYAG IKGISEEQGK EYMMAEYRQV
FGTIDWYCLD YWADKLQLDI MQAKREVEHL ISMRDDTIPL LDALRESGRE VILVTNAHPG
SLSLKIEHTA LDSHIDTLIS THEFGVTKES QLLWQKLQQR VGFDSKHTLF VDDSLPILQS
AKDFGIAHLL AVSNPDSQLP IKDVTQFLAT SDYRTLLDDI RNAPFTG
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