| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0129 |
|---|
| Symbol | |
|---|
| ID | 4172156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 155186 |
|---|
| End bp | 156976 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053128 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_659715 |
|---|
| Protein GI | 109896460 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA GTTGGATAGA TATACTCGTT ATCATTGGTT ATTTAGTACT GGTGTTAATG
ATCGGTTTGT ACATTTCACG GCGTGCTAGC CGTGACATGG ACTCCTACTT TTTAGGGGGC
AAAACCATTC CCTGGTGGGC GCTTGGGGTG TCAAATGCCT CGGGTATGTT CGATATTGCG
GGCACCATGT GGTTGGTGTC TATGTGCTTC GTCTACGGTT TGAAGAGCGC GTGGTTGCCT
TGGATATGGC CGATATTTAA CCAAATATTT TTGATGATTT ATTTGTCCAT ATGGCTACGT
CGTTCAAACG TGATGACAGG GGCCCAGTGG ATGGAAACGC GCTTTGGCAC TGGCAAAGGC
GCAGAAATGA GTCAAATGGT GGTAGTGATA TTTGCCTTGG TCAGTGCGAT AGGCTTTATT
GCGTACGCCT TTAAAGGCAT AGGCAAGTTT GCCGCGATCT TCTTCCCGTG GGAATTATCA
CCAGACATTT ATGCGTTGAT TATCTTCTCG ATCACCACGA TTTACGTGGT CAAAGGGGGG
ATGTACAGCG TGGTCTTCAC TGAGATTTTG CAGTTTGTGA TTATGACGAT TGCGGCTGTT
TCTGTGGGGA TCATTGCCAT GTATATGGTG TCACCAGAGC AACTGGCTGC TGCCACGCCT
CACGGTTGGG ATCAGCTGTT TTTCGATTGG CGATTAGACC TTAACTGGCA AGGCTTGATT
GATAGCGTCA ATGTTAAAGT GGAAGAGGAC GGTCTTGAGT TGTTCGGACT CATGATCATG
ATGATGCTAT TTAAAGGTGT GCTATCTAGC ATGGCCGGCC CAGTGCCGAA CTATGACATG
CAACGTATTC TAGCCACCAA AAGTCCCAAA GACGCGGCAA AAATGAGCGG CTTGGTGTCT
CTGGTAATGT TTTTCCCTCG TTACATGATG GTGGCAGGGT TATCTATCTT GGCGATTGTG
TACATGGGCC CAGACATTCA GGCCCAAGGT AAGCAATTTG ATTTTGAGCA GATTTTGCCC
TTTGCCATCA ATAATTTTGT GCCTGTAGGC TTAACCGGTT TGCTTATAGC TGGTTTGCTC
GCAGCCTTTA TGTCGACTTA TGCAGCGTCG GTCAATGCTG CTCCCGCATA CTTTGTGAAT
GATATCTATC GTCGTTACTT ACGCCCAGAT GCAGACAGTC GCACTTATGT GCGTATGAGC
TACATAGTGT CTATTGTACT CGTGGTATTA GGTATGGGCT TAGGCCTGAT GCTAGGTAGC
ATCAACGCGA TTATGCAGTG GATCTTCGCT GCCTTATTTG GCGGGTATGC AGCGGCTAAC
TTATTGAAAT GGCATTGGTG GCGATTCAAC GCCTATGGTT ATTTCTGGGG CATGTTAGCA
GGTTTGATTG GGGCGCTGGT GTTACCGATT GCGCTCCCCG ATGTGCAACC CTTAATGGCA
TTTCCGCTGC TACTGGTATT CGGATTGGTT GGCTCGATTG CAGGGACTTT ACTGACACCC
CCTGAATCAG ACGAGGTGTT ATGTGAGTTT TATCGAACGG TGAAACCCTG GGGGGCATGG
GGACCAATTC GTGACAAAGT CATAGCCTTG GATCCTGGCT TTGCCCCAAA CAAAGAATTT
TCTCGTGACA TGTTCAATGT TGCTATCGGT ATCGTGTGGC AAATAGCCTT AGTGGTGATG
CCGATTTATT TAGTGATTCA GCAGTGGTGG TCCATGTTGG CAGCCTTTGG GGTCATTGTT
GTGACCAGTT GGATCTTAAA AAAGAACTGG TTAGACAAAC TCCCCGACTG A
|
|---|
| Protein sequence | MILSWIDILV IIGYLVLVLM IGLYISRRAS RDMDSYFLGG KTIPWWALGV SNASGMFDIA
GTMWLVSMCF VYGLKSAWLP WIWPIFNQIF LMIYLSIWLR RSNVMTGAQW METRFGTGKG
AEMSQMVVVI FALVSAIGFI AYAFKGIGKF AAIFFPWELS PDIYALIIFS ITTIYVVKGG
MYSVVFTEIL QFVIMTIAAV SVGIIAMYMV SPEQLAAATP HGWDQLFFDW RLDLNWQGLI
DSVNVKVEED GLELFGLMIM MMLFKGVLSS MAGPVPNYDM QRILATKSPK DAAKMSGLVS
LVMFFPRYMM VAGLSILAIV YMGPDIQAQG KQFDFEQILP FAINNFVPVG LTGLLIAGLL
AAFMSTYAAS VNAAPAYFVN DIYRRYLRPD ADSRTYVRMS YIVSIVLVVL GMGLGLMLGS
INAIMQWIFA ALFGGYAAAN LLKWHWWRFN AYGYFWGMLA GLIGALVLPI ALPDVQPLMA
FPLLLVFGLV GSIAGTLLTP PESDEVLCEF YRTVKPWGAW GPIRDKVIAL DPGFAPNKEF
SRDMFNVAIG IVWQIALVVM PIYLVIQQWW SMLAAFGVIV VTSWILKKNW LDKLPD
|
|---|
| |