| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0122 |
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| Symbol | |
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| ID | 4171804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 142237 |
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| End bp | 145131 |
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| Gene Length | 2895 bp |
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| Protein Length | 964 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053121 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_659708 |
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| Protein GI | 109896453 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00390144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAACA CCAGTGACAA AATATTCGGT AAATCAATGC TGAATTTTGC GGTTGTGTGT
GCAATGGGTC TTGTACCTTC GTACGCGTTA GCACAGCAGA CAAACCAAGA GCCCAGTGGC
AGCGATGCAG AAACTGAGGT CATTCAAGTA CGTGGTATTC GTGCTTCAGC TGCAGAAAAT
TTAGCAATCA AGCGATTGTC GAACGCGGTA GTGGATGCCA TCACGGCAGA AGATATCGGT
AAGTTCCCAG ATAAAAACGT TGCGGATTCT TTGCAGCGTG TACCTGGTGT TGTTATTCAG
CGCAACGGCG GCGAAGGTTC AAGTGTGAGC ATACGTGGTT TATCGCCTAG CCTGACGTTT
ACCCAATTAA ACGGTAACTT TATTGCAGCC TCTTCTGGTA ACCCGTCTCG CTCGTTCTCC
TACGAGTTAC TGCCTTCAAA CTTAGTCGGT AAGGTCGAGT TATTTAAATC GTCTGAAGCC
CGCCTCGATG AAGGCGGTAT CGGCGGTACG GTCATAGTAC ATAGCCGTAA ACCGCTAGAC
ATGGATAAAA ACTCGGGCGT AGTTAGCCTC GAATACACTT ATGCAGATAT TACAGATTCC
TACGAGCCTC AGCTAAGTGG TATCTATTCT TGGAAGACTG ACGAAGAAGA CTTTGGTTTT
TTGGTGGGCT TTACACAGCA AGACAGAACC AACCGTACTC AGACTTCTCG AGTCAATATC
ATCAATCAAA ACTTTTTGTA TACCGAGCGT CGCAACGGTC AAGAGATTGA AGGCGGTGCC
CAAGGATATG CGCGCCAAAG TTTAGTTCAA GAAGTATTAG AAGAAGATCG CGAGCGCACT
GGCGTGCAGT TTACTGCGCA ATGGCGCCCC ACTGATAATT TAGAAGTTGG CTTCAACTAC
TTTCAATTCA AACTCGGCTT AGATTCGGTT TTACACCAAC TTGAATACCC TGAGTGGCAT
GATACCAACC AATTTTGGAC GGACGTATAC GTTGATGCAG AAGCGCAATA CGTCACAGGT
ATTGACTACG CCAGAGGCGT TTCAGGAGAA GCGTTAGATA CGCAAATTCC CCGCATGAAC
GGCGAGTACG TGGTTGAAGA GTCTACGTCT GACACGTTCG ACTTTTTCAT GGAATACGAA
GGCGGCGACT TTAATGTGAA ATTTGTTGCT GGTCATACAG AAGCTGAAGG TGGGCCGACT
GAAAAGTACC GTGCCGCATA TTATTCTGGT AGTACTGCAG ATTATTGGGG CTGGCGTTTT
GAAAACGAAA ACCTAGTCAC TAATATTGAT CCAGAAATGT TTAATCGCTT AAAGGCCGGT
GAAGGTGGTG AAGCGGATAT AGGCGCCACG GATTCAAGCT TTGTTGGCGG GACTCAAGAA
GAAGATTACG CCCAGATTGA TACGGATTGG TTTGTTGACT GGGGCATAGT TGAAACGCTG
CGCTTTGGTG TGAAGTATCG TAAAGGCTCT ATTCATCGTG ACACACGCAA TACCTACTAT
CTAGCCAAAG ATTTTGATAT CGCAGCAGGT GAAGCACGTC CTGGCGGGAT CACGCTGGAT
GATGATTACT CACGTAATGG CGGTATTCCA CTGCTTACCA CTGTGATTGC TGACCAGCCT
TTAGGAAACT TAGGTGGGTC AATTAATACG AACTTGTTCC CGGTTGTGAA CTGGAACAAA
TATCAAAATG AGTTAGAGAC CAATTTCCAA CGTTACACCC GTTTTGAACC CGACTTTGTC
TATGACGTAG AAGAAGAGGT TAAAGTTGCT TACGTGCAAG CTGATTATCG TTGGGAAAAT
TTCCGCGGTA ATTTTGGCGT ACGTTTTGTA GACACAGTTA ACACCAACAC CGCCAGTGAT
CGTTTGGAGT TTCGCTTAGA CCGCGTCAAT CTTGACGGAG ATGACGTTGC CCAAGTTAAC
GGTATTGTGC GCGACGTGAT TGTTAACCCT AAAGAAAATT CATACAGCCA CGTTCTGCCT
AGCTTTAACA TCGCCTGGGA TATCAACGAT GATTGGGTAT TGCGCGGCGC AGCAGCGAAA
GTGTTATCAC GCCCTGATTA TGCTGATTTA GGCCAATTCC AAACATTGAC CTACAACTCA
AGTGAGTGGG AAGCAGATTC TAGCGATCGC CCAGATTATG ATCCCCTGCG TGACAGTGAA
GGCTGGACAG GCAGCGGCGG TAATTCATCG CTACGTCCTC TTGAATCAGT GCAATACGAC
TTATCACTAG AGTACTACTA CGGGGAAGGC TCGGGCGTCA GCTTGGCTGT GTTCTTAAAA
AATATTGATA ATTTCGTTGT GCCATTCACG TTAGATGTGA ACAGCAGTGT TCCTGATCAA
ACGTTTACCT TGGTCGAGTC AGGTGGTGGT ACGGTCAATG TTGGTGGAGA CATATTGGTA
CGTGATTTCG ACACCGCGGC CAACGGCACT GATGCTGAGT CTAAAGGGGT TGAGTTCTCA
TTCCAGCATT TCTTTGAAAA CGGCTTTGGG GTATCGGGTA ACTACACACG CAATATCACC
AGCGCCGCTA CCGTTGAGGC TGATGGTCGC CTAGTGGGTG AATCGCCATT AACGGGCAGC
TCAAAATATC AAGGTAACTT CTCGGCCTTT TATGAGAATG ACGATTACAG CCTTCGCGTT
TCATATAACC GCAGAGGCCC AACAATTGGA GTACTGGCCG AAGATTGGGA CATCAACCGT
TATAGCGATA CCTATGATCA AGTTGACGTA AACGCCAGCT ATAACATAAA CGAAGATATC
ACCTTGAGCG CCTCGGTTAT CAATCTGACT AAATCAGAAG ATTACGTCCA TTTAGGGGAT
GACACCAAAG TACGCTTCTT AACTAATTCG TACAGCGGGC GTCGCTTCTT TGCAGGCGTC
AATTACAGAT TTTAA
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| Protein sequence | MNNTSDKIFG KSMLNFAVVC AMGLVPSYAL AQQTNQEPSG SDAETEVIQV RGIRASAAEN
LAIKRLSNAV VDAITAEDIG KFPDKNVADS LQRVPGVVIQ RNGGEGSSVS IRGLSPSLTF
TQLNGNFIAA SSGNPSRSFS YELLPSNLVG KVELFKSSEA RLDEGGIGGT VIVHSRKPLD
MDKNSGVVSL EYTYADITDS YEPQLSGIYS WKTDEEDFGF LVGFTQQDRT NRTQTSRVNI
INQNFLYTER RNGQEIEGGA QGYARQSLVQ EVLEEDRERT GVQFTAQWRP TDNLEVGFNY
FQFKLGLDSV LHQLEYPEWH DTNQFWTDVY VDAEAQYVTG IDYARGVSGE ALDTQIPRMN
GEYVVEESTS DTFDFFMEYE GGDFNVKFVA GHTEAEGGPT EKYRAAYYSG STADYWGWRF
ENENLVTNID PEMFNRLKAG EGGEADIGAT DSSFVGGTQE EDYAQIDTDW FVDWGIVETL
RFGVKYRKGS IHRDTRNTYY LAKDFDIAAG EARPGGITLD DDYSRNGGIP LLTTVIADQP
LGNLGGSINT NLFPVVNWNK YQNELETNFQ RYTRFEPDFV YDVEEEVKVA YVQADYRWEN
FRGNFGVRFV DTVNTNTASD RLEFRLDRVN LDGDDVAQVN GIVRDVIVNP KENSYSHVLP
SFNIAWDIND DWVLRGAAAK VLSRPDYADL GQFQTLTYNS SEWEADSSDR PDYDPLRDSE
GWTGSGGNSS LRPLESVQYD LSLEYYYGEG SGVSLAVFLK NIDNFVVPFT LDVNSSVPDQ
TFTLVESGGG TVNVGGDILV RDFDTAANGT DAESKGVEFS FQHFFENGFG VSGNYTRNIT
SAATVEADGR LVGESPLTGS SKYQGNFSAF YENDDYSLRV SYNRRGPTIG VLAEDWDINR
YSDTYDQVDV NASYNINEDI TLSASVINLT KSEDYVHLGD DTKVRFLTNS YSGRRFFAGV
NYRF
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