Gene Patl_0121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0121 
Symbol 
ID4171803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp140937 
End bp141944 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content45% 
IMG OID638053120 
ProductLacI family transcription regulator 
Protein accessionYP_659707 
Protein GI109896452 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0425024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAATA TTAAAAAAGT AAGTGAGCTT GCAGGCGTAT CAACCGCAAC AGTATCACGC 
ACACTTAAAA TGCCAGATAT GGTCACCGCT CGAACCAAAG AAAAGGTGAT GAAAGCCGTT
CGTGAAGCGG GTTATAGGCC AAGCTGGTTA GCGACCAGTG TTAAAACTGG GCGCACAAAT
ACTATCGTTG TTTTAGTTCC TAATCTGATA AACCCCTTCT TTATGCGCAT CATTGGCGGC
ATTGAGCAGG CCGCCCAAGA ACGTGGTTTT ACAGTGTTAC TGTGCGATAC CCAAGGGGAG
AGTAAGCGCG AAAGTGATTA TGCTTCTATG GTATTGACCA ATAGGGCTGA TGGCTTAATT
CAACTCGATC ATTCATTTCC CTTTACTGAA GATGATGCCA AATTAGCTGA AACTATTCCT
ATGGTCAGTG TTTGTGAACG TATTCACTCT GATAAAAAAT ACCCAGTCGT GGCGCTTGAT
AACTATGCCG CTAGCCGCGC CTTAGCCCAT CACTTAGTCA GTTATGGACA TACCAAGTTC
GCTGTTATTG TGGGCCAAGT GGTTAGCCAA ATTCATAAAG ATCGTCTCTA CGGGCTGCGC
AGTGTCTTAG CGGAAGAGGA TATTGAGTTT GACGAAGACA TGATAGTTGG GCAAAGCTAT
AGCATTGAAA ATGGCATAGA AGGTATGCGC CAATTATTAG AAAAACCTAA TCGACCCAGC
GCGGTTATCT GCTTTAACGA TGATATAGCG ATTGGTGCCA TGCACGAAAT TCATCGCCAA
GGACTACGAG TACCAGAAGA TATTTCCGTG GTGGGATTTG ATAACGTAAA AGTGGCTGCT
TTTATGAATC CCCCGTTAAC AACTATTGAT CAACCCGCTT ATGAAATGGG TCGCAGAGGA
ATGGAGATCC TCAGTGATGT AATTAATGGG GTTCCGTTGA CTCGCAGTAG CGAAATGCTT
CCTTTTCAAC TGCTTGAGCG TGAAAGTAGC GGCCCCGCTC CTATCTAA
 
Protein sequence
MTNIKKVSEL AGVSTATVSR TLKMPDMVTA RTKEKVMKAV REAGYRPSWL ATSVKTGRTN 
TIVVLVPNLI NPFFMRIIGG IEQAAQERGF TVLLCDTQGE SKRESDYASM VLTNRADGLI
QLDHSFPFTE DDAKLAETIP MVSVCERIHS DKKYPVVALD NYAASRALAH HLVSYGHTKF
AVIVGQVVSQ IHKDRLYGLR SVLAEEDIEF DEDMIVGQSY SIENGIEGMR QLLEKPNRPS
AVICFNDDIA IGAMHEIHRQ GLRVPEDISV VGFDNVKVAA FMNPPLTTID QPAYEMGRRG
MEILSDVING VPLTRSSEML PFQLLERESS GPAPI