| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0116 |
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| Symbol | |
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| ID | 4171798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 131145 |
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| End bp | 133427 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053115 |
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| Product | putative alpha-1,2-mannosidase |
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| Protein accession | YP_659702 |
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| Protein GI | 109896447 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
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| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0692372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAT TAGTCAATAT GGCAGTAGCT GCGCTTACTT TGGCCGGTGT CGGCTGTTCA
GTTGCGAAAA CGCCTAACGA CGTTACCGGG GAAACATCGC AAAAAACACC TGCCGAGTAT
GTTAACCCGT TTATTGGCAC CTCCAATTTT GGGGCGACCC ATCCGGGGGC GCAGTACCCT
CATGCACTCA CATCGGTTGC GCCTTTTAAC GTTGCGTTCG AACACAAAAA ACTGAATGAG
TTTGAAAAAG ATGCCGCGTG GAATTCACGT GTATACATCC ACGAAAATAA ATTTTTGACT
GGTTTTACTC ATGTGAATTT AAGCGGGGTT GGTTGCCCAG AGTTGGGGGT CATTAATATC
ATGCCCACCG CAGGCAATTT AGAATTAGAC GCCCAGCAAT ACGGCTCAAC CTATTCGAAC
GAGCAGGCAA GTCCAGGCTA CTACCAAACC ACACTCGATA AATATGGCAT CAAGGCAGAA
GCCACCAGCA CATTGCGTAC AGGCCTAAGC CGCTACACCT TTCCCGCAGG CCAAAGCAAT
ATCATTGTTA ATTTGGGCCT AGGCTTAACC AACGAAACCG GCGGCTCTCT CAAGGTTGTG
TCTGAGCAAG AAATTGAAGG CTCTCGCACG GTAGGCACGT TTTGCTATAA CCCCCAAGAC
GTGCGCCCTG TGTACTTCGT AGCACGTTTT AGTAAACCAG CCAAAGCCTT GGGCACGTTT
AAGAAAATGC CAGCGTTCAC AGGGGTGGAA GGCGAATGGA TGCAGCACAA TAACAGCATC
AAGCCTTATC CGAACTATCA GCGCGTTATG AGCGGTGACA ATATCGGTGC TTACATGCGT
TTCGATACAC AGGCTAACGA GCAAGTTGAA GTCAAAGTAG GTATTTCTTA TGTCAGCATC
GAAAACGCGC GGCAGAACCT AAACACTGAA CAGCCCGACT TTGCCTTTGA TCGCACCCGC
AAAGACGCCC AAGACGCTTG GAATAGCTTA CTCTCACGCA TCGAAGTACA AGGTAGCGAG
CATAACAAAA CGCTGCTTTA CACTGGCCTG TATCACAGTT TAATTCACCC TAGTATCATT
CAAGATGTGA ACGGCGAGTA CCCGATCATG AGCCAGCAAC ACACGGCGAA AGTGGGCAAT
ACGCAGGGTA AAAATCGCTA TTCGGTATAT TCACTGTGGG ACACGAGTCG TAACCTGCAT
CCATTGCTAA GTTTGGTCTA CCCTGAAATC CAATCACAAA TGGTTGATTC TGCTCTTAGT
ATGTATCAAG AAAGTGGTTG GTTACCCAAG TGGGAGTTAC TCAGCATGGA AACCCAAACC
ATGGTCGGTG ACCCAGCTAC CGCCATGATT GCTGACACCT ATTTACGCGG CGTACACACC
TTTGATGTAG AGCTGGCTTA CCAAGCCATG CAAAAATCCG CAGACACGGT AGAAAACAAC
CCTATTCGCC CTGAGAACCC AGACTACCTG AATTTAGGGT ATGTGCCTGT TGATGACGAA
GAGCCGTTCG ACGGTAGCGT GTCTACCAGT CTTGAATATT ATGTGGCGGA CTTCGCTCTA
GGTCAGCTTG CAAAACGTTT AGGTCGCGAC CAAGATGCGC AAAAGTACCT GGCCCAAGCA
CAGAACTATA AAACGTTATT TGATGAAAGT ACTGGCATGC TGCGCCCGAA AAAACGCAGT
GGTGACTGGT TAACCCCTTA CGATCCCGAA TTAGGGCGCA ACTTTGAACC CGCACCGGGT
TACATTGAAG GCAATGCATG GAATTACCGC TTCTATGTGC CTTTTGATAT GCCAGGTTTA
ATTGCGTTAA ATGGTGGTGA CAGTGCTTTT ATAGCTGCAT TAAACGCCAC CTTCGATACC
AACAACTTCG ATATGGGTAA CGAACCCGAC ATTACTTACC CTTACCTATT TAACTACGTG
CAAGGCCAAG AGCATAACAC CGCGCAGCAT GTAAAAAGGC TGATAGCGAA GTACTTTACC
AATCAATCGG CTGGGCTGCC CGGCAATGAC GATGCTGGCA CTATGTCAGC ATGGTTAGTC
TTCAGCTTAT TAGGCATTTA CCCTGTGTCT CCTGGAGACA TGGACTATGC CCTAACGAGT
ACAGCGTTTG ACGAAGTGAC CATTCACCTC GACTCAAAAT ATTATGCAGG CAAAACCCTG
ATCATAACCC CTTTGAGCCA AGGGCAAAAA CAGCCTTCAC TTAATGGCGA TCCGCTAAGT
AAGGCATTTA TTAGCCATCA GCAACTCACC CAAGGTGCGA AGTTGCGCTT AAAAGCTCAG
TAA
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| Protein sequence | MKILVNMAVA ALTLAGVGCS VAKTPNDVTG ETSQKTPAEY VNPFIGTSNF GATHPGAQYP
HALTSVAPFN VAFEHKKLNE FEKDAAWNSR VYIHENKFLT GFTHVNLSGV GCPELGVINI
MPTAGNLELD AQQYGSTYSN EQASPGYYQT TLDKYGIKAE ATSTLRTGLS RYTFPAGQSN
IIVNLGLGLT NETGGSLKVV SEQEIEGSRT VGTFCYNPQD VRPVYFVARF SKPAKALGTF
KKMPAFTGVE GEWMQHNNSI KPYPNYQRVM SGDNIGAYMR FDTQANEQVE VKVGISYVSI
ENARQNLNTE QPDFAFDRTR KDAQDAWNSL LSRIEVQGSE HNKTLLYTGL YHSLIHPSII
QDVNGEYPIM SQQHTAKVGN TQGKNRYSVY SLWDTSRNLH PLLSLVYPEI QSQMVDSALS
MYQESGWLPK WELLSMETQT MVGDPATAMI ADTYLRGVHT FDVELAYQAM QKSADTVENN
PIRPENPDYL NLGYVPVDDE EPFDGSVSTS LEYYVADFAL GQLAKRLGRD QDAQKYLAQA
QNYKTLFDES TGMLRPKKRS GDWLTPYDPE LGRNFEPAPG YIEGNAWNYR FYVPFDMPGL
IALNGGDSAF IAALNATFDT NNFDMGNEPD ITYPYLFNYV QGQEHNTAQH VKRLIAKYFT
NQSAGLPGND DAGTMSAWLV FSLLGIYPVS PGDMDYALTS TAFDEVTIHL DSKYYAGKTL
IITPLSQGQK QPSLNGDPLS KAFISHQQLT QGAKLRLKAQ
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