| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0112 |
|---|
| Symbol | |
|---|
| ID | 4171794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 126363 |
|---|
| End bp | 128315 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638053111 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_659698 |
|---|
| Protein GI | 109896443 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.339786 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAAA TTTCTGATTT ATCCCTTATG CGTGGCAACA AAACCTTGCT ACATGAAACC
AATGCAGTGC TGTACCCAGG GCATAAAGCA GGTCTTATCG GTGCAAATGG CTGTGGAAAA
TCCAGCTTGT TTGCGCTTAT TCGGGGAGAA TTACACCCTG AGCAAGGCGA GTGCAATATC
CCTAAAGACT GGCAGGTCGT ATCCGTTGCC CAGGAAACCC CAGCAGTTGA ACGCTCAGCC
CTTGATTATG TGATTGACGG CGACAAGCTA TACCGCCGCT TACAGGCAGA ATTGCGTGCA
GCGGAAGACG CCCATGATGG CGTTAAAATC GCCGCGCTAC ACGGCCAATT AGACCATGCA
GGTGCTTACG ATATTGAATC CCGCGCGGCC ACCATATTAG CGGGCTTAGG TTTTGCGAAC
GACGCTATTG CCCGTCCGGT CACCGCGTTT TCAGGTGGTT GGCGTATGCG TTTGAACTTG
GCGCAAGCAC TTTTATGCCA TTCAGATTTA TTACTGCTTG ATGAGCCCAC CAACCACTTA
GATTTAGACG CTGTCATTTG GCTTGAAAAG TGGTTGCAGC GCTACGCTGG CACCTTGTTA
CTGATATCTC ACGATAAGTC CTTTTTGGAT AGCACAGTGA ACGAAATTAT CAGCGTTGAG
CAACAGCAAC TGGTTAGCTA CACAGGTAAC TACGATGCCT TCGAGCGCCA ACGTGCAGAG
CGCTTGCGCT TACAGAACCT ACAGTTTCAG AAGCAACAAG ATAAAATTGC CCATTTAGAG
TCGTTTATCA ATCGTTTCGG TGCTAAAGCG AGCAAGGCCA AGCAGGCTCA AAGTCGTGTG
AAGCAACTGG AGAAAATGGA AACCTTATTG CCAGCGCTTG CCGCTTCACA GTTTAGTTTT
GAGTTTTTTA TGCCGCCCAA ATTACCTAAC CCACTGGTAA AAATGGAGCA GGTACGACTG
GGGTACGACG ACACAATTAT CTTGGAAAAA CTGCATCTCA ATTTAGTGCC CGGTAGCCGC
ATTGGGCTAC TTGGTAGAAA TGGTGCGGGT AAATCAACGT TAATCAAACT ACTTGCTGGG
GAAAAAGAGC CCATGCAAGG CATTTACGAA ACCTCAGCAG GTTTGCGCAT TGGCTATTTT
GCTCAGCATC AATTGGAATA TTTGCGCGCT GACGACTCAG CTCTCGCCCA TATACAGCGC
CTCGATCCAA AAGCCACCGA ACAAAGTCTG CGGGATTATT TAGGCGGCTT TGGTTTTAGG
GGGGATGATG CCCTAGGACG TGTGGCCCCC ATGTCGGGGG GGGAAAAAGC GCGCTTAGTG
TTGGCGCTAA CTGTGTATCA AAAGCCTAAC TTGTTGCTAC TCGATGAGCC TACCAACCAT
TTAGACTTAG ACATGCGTCA TGCACTGAAT ATGGCCCTTC AGGGGTTTGA AGGGGCAATG
GTTTTGGTAT CCCATGATAG GTTCTTGCTA ACGTCTGTTT GTGATGATTT TTACTTGGTG
GATAACCAGC AAGTCACCAT GTTTGATGGG GATTTAGATG ACTATCGTGA TTGGTTGCTA
AAATCAGACC GAGAAAAACA ATCAGCCGAT AAGCTGGCGA CAGCTAAAGG TGCTGCTGAC
AAAGAGGGCG CTGAGAACAA AGAGCCAAAG CTAGATCGTA AAATTATTAA GCGCCTAGAG
GCTGAATTTA GGCAAGCGAC GCAATCTCTG CGCAAAACGG TGCAAACCCA AGAGAAAAAA
ATGGCCGAGC TTGAAGCCAA ACTTGAAGGT ATAGAGCAAA AAATGGCAGA CCCAGATATT
TACAATGCTG ATAAAAAAGC CGAGTTAAAA GTGCTATTAG CGGACCAAGC GAGTTGCAAA
GTTGCCCAAG AAGAAGCAGA AATGCTGTGG CTAGATGCCC AAGAGCAAAT TGAAGCCAAA
CAGGCAGAAT TTGATGCTCA GGTGACGGGT TAG
|
|---|
| Protein sequence | MIQISDLSLM RGNKTLLHET NAVLYPGHKA GLIGANGCGK SSLFALIRGE LHPEQGECNI
PKDWQVVSVA QETPAVERSA LDYVIDGDKL YRRLQAELRA AEDAHDGVKI AALHGQLDHA
GAYDIESRAA TILAGLGFAN DAIARPVTAF SGGWRMRLNL AQALLCHSDL LLLDEPTNHL
DLDAVIWLEK WLQRYAGTLL LISHDKSFLD STVNEIISVE QQQLVSYTGN YDAFERQRAE
RLRLQNLQFQ KQQDKIAHLE SFINRFGAKA SKAKQAQSRV KQLEKMETLL PALAASQFSF
EFFMPPKLPN PLVKMEQVRL GYDDTIILEK LHLNLVPGSR IGLLGRNGAG KSTLIKLLAG
EKEPMQGIYE TSAGLRIGYF AQHQLEYLRA DDSALAHIQR LDPKATEQSL RDYLGGFGFR
GDDALGRVAP MSGGEKARLV LALTVYQKPN LLLLDEPTNH LDLDMRHALN MALQGFEGAM
VLVSHDRFLL TSVCDDFYLV DNQQVTMFDG DLDDYRDWLL KSDREKQSAD KLATAKGAAD
KEGAENKEPK LDRKIIKRLE AEFRQATQSL RKTVQTQEKK MAELEAKLEG IEQKMADPDI
YNADKKAELK VLLADQASCK VAQEEAEMLW LDAQEQIEAK QAEFDAQVTG
|
|---|
| |