Gene Patl_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0100 
Symbol 
ID4172872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp114100 
End bp114525 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content45% 
IMG OID638053099 
ProductMarR family transcriptional regulator 
Protein accessionYP_659686 
Protein GI109896431 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTTG AAAACTTACA GTTAAAAAAT CAGCTATGTC ATCGCTTGTA CATGGCTTCC 
AATAATATCG CCCGTGCCTA TCGCGAGCCT TTACTTGCAC TGAATCTGAC CTACCCGCAA
TATGTGGTGA TGATGGCGTT ATGGGAAAAG GACGGGATCA CCATCGCCCA ACTCATCGAG
CAAACCGCTA TCGATGGTGG CGCGATGACG CAAATTTTGA AAAAGATGGC AGACAAAGAG
CTGCTTAACA TCATTAAAGA CGAGCAAGAC AAACGAAAAC GGGTAATAAA GCTCAGTGAC
TCAGGCCAAG CGTTAAAGCT TAAAGCCACT GACGTCCCCG ACAAAGTATT GTGTCAATTT
GCAGCGATTA CCCCAGCACA AAGTAAACAG CTAATGGATT TGCTTGATTT GGTTGTGGCC
GTTTAA
 
Protein sequence
MSFENLQLKN QLCHRLYMAS NNIARAYREP LLALNLTYPQ YVVMMALWEK DGITIAQLIE 
QTAIDGGAMT QILKKMADKE LLNIIKDEQD KRKRVIKLSD SGQALKLKAT DVPDKVLCQF
AAITPAQSKQ LMDLLDLVVA V