| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0088 |
|---|
| Symbol | |
|---|
| ID | 4172860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 102565 |
|---|
| End bp | 103050 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638053087 |
|---|
| Product | 3-dehydroquinate dehydratase |
|---|
| Protein accession | YP_659674 |
|---|
| Protein GI | 109896419 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0757] 3-dehydroquinate dehydratase II |
|---|
| TIGRFAM ID | [TIGR01088] 3-dehydroquinate dehydratase, type II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.2275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA ATTATCATTT TAACGAAGAT AGCGGCGTAT TCTTGAAAGT TTTATTAATT
AATGGACCCA ACCTCAATAT GTTGGGCAAA CGTGAACCCG AAGTTTATGG CTCACGTAGC
CTACAAGATA TTGTTAACAC CTTAAATGTG CAAGCAAAAG GCATGGGGAT CGAGTTAGAT
CATGTGCAAT CAAATGCTGA GCACGAGTTA ATCGATGCTA TTCACAGCGC TTATCAAAAA
GTCGACTTTA TAATGATCAA TCCTGGTGCC TTTACGCATA CCAGCGTTGC CTTACGCGAT
GCTTTACTCA GTGTATCGAT TCCTTTCATC GAAGTGCATT TATCCAATGT TCATGCTCGC
GAACCTTTTC GCCATCACTC GTACTTATCA GACGTAGCAG TGGGGGTGAT ATGTGGTTTG
GGTGAACAGG GTTATGCGTT TGCACTCAAT GCAGCTCAAC AACATGTAAA TAACCAAACG
AATTAG
|
|---|
| Protein sequence | MKDNYHFNED SGVFLKVLLI NGPNLNMLGK REPEVYGSRS LQDIVNTLNV QAKGMGIELD
HVQSNAEHEL IDAIHSAYQK VDFIMINPGA FTHTSVALRD ALLSVSIPFI EVHLSNVHAR
EPFRHHSYLS DVAVGVICGL GEQGYAFALN AAQQHVNNQT N
|
|---|
| |