Gene Patl_0086 details

Gene Information

• Locus tag: Patl_0086
• Symbol: upp
• ID: 4172858
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 101096
• End bp: 101725
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638053085
• Product: uracil phosphoribosyltransferase
• Protein accession: YP_659672
• Protein GI: 109896417
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0035] Uracil phosphoribosyltransferase
• TIGRFAM ID: [TIGR01091] uracil phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.91121
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCAGTCA AAGAAATCAA TCACCCCTTA GTGCAACATA AATTAGGTTT GATGCGCGAG 
GCTGGCATCA GCAGCAAAAA TTTTAGAGAG CTTGCCAGTG AAGTGGGTAA TCTGCTGACC 
TACGAAGCGA CCCGAGAGTT AGAAACCGAG ACTGTTGAGA TTAACGGCTG GAACGATCAG 
CCGATTAAAG TCAAAAAGAT CAAAGGCAAG AAAATCACCA TAGTCCCTAT TCTGCGTGCC 
GGTCTTGGCA TGTTAGACGG TGTTATGCAG CTTATCCCAA ATGCAAAGGT CAGCGTGGTA 
GGTTTGTATC GTGATGAAGA AACGCTGCAG CCGGTGGCTT ATTTCGACAA AGTGGTAAAA 
GATGTGGAAG AGCGCACTGC GCTAATAGTT GACCCTATGC TCGCCACCGG CGGTACGTTA 
ATCGCGACCA TCGATTTACT GAAAGAAAAA GGTTGCCAAC ACATAATGGG CTTATTCTTG 
GTCGCGGCAC CAGAAGGCAT AGAAGCGGTT GTGAGCAAAC ACCCAGATGT AGACATTTAT 
ACCGCAGCCG TAGATGACAA ACTCAACGAG CACGGTTACA TTTTACCAGG CTTAGGTGAT 
GCCGGAGACA AAATATTCGG TACACGATAA 

 

Protein sequence

MSVKEINHPL VQHKLGLMRE AGISSKNFRE LASEVGNLLT YEATRELETE TVEINGWNDQ 
PIKVKKIKGK KITIVPILRA GLGMLDGVMQ LIPNAKVSVV GLYRDEETLQ PVAYFDKVVK 
DVEERTALIV DPMLATGGTL IATIDLLKEK GCQHIMGLFL VAAPEGIEAV VSKHPDVDIY 
TAAVDDKLNE HGYILPGLGD AGDKIFGTR