Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0081 |
Symbol | |
ID | 4171782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 94987 |
End bp | 96576 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638053080 |
Product | histidine kinase |
Protein accession | YP_659667 |
Protein GI | 109896412 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.63025 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGATTA CCTCGTTAGC ATTGCTTTTG GCAACCTGCA TCAATTTATA CGGTCAAATC AGCAGCTACC GTCTTCAACT CATCAACAAC GTCAACATCT TTTCCGAGCT CATCAGCCGT AATGCGGTTG CCACAATCGA AGATGAGCTC AATTTCAATG AAGAGCGTAA TCTCAGCACA CTCAGTGCAT CGGATATATT AGAAAATGTG CATATTTATC GCTTTGTGGA AGACGGTAAA TTAGAATTTT TCGCCAGCTA CAACAAAGAC GGTGTCGCCC CTGTAAATGC CAAATTTGAT CGTATTGAAG CACTATCTCA AGCGGCTATT GATGGCAGTA CCGTTGAGGT GATACGTGAA ATTAATCGCG ATGATGGTCA GTTATTAGGT TATACCTATG TGCGCGCTTC AGCTGATGGC CTTGAGAGAT TAATTTCTCG CTCAGTAGGT ATAGCGGTGG GCGTGCTGCT TTTGTCTTTA CTACTGTGCT TCTTGCTCAC CTTAAAGTTG CAGAACACGA TCACCGCGCC GATCCGCAAT TTAGCACACT TGGTGCAACG CATTTCTCGT CACAAAGATT ATTCAGGCCG AGCTCAGCCG AGCAACATCA AAGAACTGGA TATTCTCAGC GATGCATTTA ATGCCATGAT GCAGCGCACT CAAGAGCATC TGCAGCGGCA AAATGAGGCT GAAGAAGAGC ACAGACGACT CAACAGTAGC CTCGAGGAAA AGGTCACTCA GCGTACGCTT GCTTTAAAAG AAGCAAACAA CGAACTCATT CAAACCTTAG AGAAACTGCA TCAATTTCAG CGTCAAATGG TGCAGAACGA GAAAATGGCT TCCCTTGGAG ATATGGTGGC GGGGGTTGCT CACGAGGTAA ACACACCTAT TGGTCTTGGT GTGACTGCGT CAACGATGAT GCTCGACCGC TTAGCGGGCA TGCAGAAAGA CTTTGAGAAT AAAACGCTAA AAGCCAGTTC GTTATCCAAG TTTATCTCAG AAGGCCAAGA AAACCTCAAT ATCATCTATC GCAACTTAAA TCGAGCGGCG GAGCTGATAT CTAGCTTTAA GCAAGTTGCG GTAGACCAAT CATCAGAGGT CGACAGGGTT TTCTCATTTT CAAAACTGAT GGATGAAATT TTGTTATCCA TGCGCCCAAA ACTGAAAAGC ATGAAGCACG TCATTCATGT CGAATGTCCT GAAAATTTAT ATATTGAGTC TAAAGCGGGC CCAATTAACC AGATTATGAT CAACTTGATT ATGAATTCCA TTATTCACGG CTTCGAGAAC AAAGACCAAG GCGAAATTAA CATCAAAATC AGTTTGATTG CCGAGAAAAA AATCAGCGTA GTATTTTCAG ATGATGGTGC GGGTATCCCC GAGTATTTAC GTAAGCGTAT TTTTGATCCC TTTGTCACCA CCAAGCGTGG ACAGGGCGGG AGTGGCTTAG GTATGCATCT GGTGTACAAC TTAGTCACTC AAGCGCTAAA TGGTTCAATA GCTTTAACCA GCGAAGAAGG GCAGGGGGTC GAGTTCACCA TCTTGTTTCC GGTAAAAAAA GCTACCCAAA CGTTGGCGCG CAAAAACTAA
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Protein sequence | MAITSLALLL ATCINLYGQI SSYRLQLINN VNIFSELISR NAVATIEDEL NFNEERNLST LSASDILENV HIYRFVEDGK LEFFASYNKD GVAPVNAKFD RIEALSQAAI DGSTVEVIRE INRDDGQLLG YTYVRASADG LERLISRSVG IAVGVLLLSL LLCFLLTLKL QNTITAPIRN LAHLVQRISR HKDYSGRAQP SNIKELDILS DAFNAMMQRT QEHLQRQNEA EEEHRRLNSS LEEKVTQRTL ALKEANNELI QTLEKLHQFQ RQMVQNEKMA SLGDMVAGVA HEVNTPIGLG VTASTMMLDR LAGMQKDFEN KTLKASSLSK FISEGQENLN IIYRNLNRAA ELISSFKQVA VDQSSEVDRV FSFSKLMDEI LLSMRPKLKS MKHVIHVECP ENLYIESKAG PINQIMINLI MNSIIHGFEN KDQGEINIKI SLIAEKKISV VFSDDGAGIP EYLRKRIFDP FVTTKRGQGG SGLGMHLVYN LVTQALNGSI ALTSEEGQGV EFTILFPVKK ATQTLARKN
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