| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0073 |
|---|
| Symbol | |
|---|
| ID | 4171773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 85909 |
|---|
| End bp | 86748 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638053071 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | YP_659659 |
|---|
| Protein GI | 109896404 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.555561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTGT TCACGCCCCC TATTTTAATT TTCTTAATAA GCATTCACAG CTCTACGGTA
CTTGCCTTAA CCAAGCCAGA AATCGAGTTA GCCAATCGTT TCAATGATGC TGTTAACGTC
TCTGACTATC TTGTGAGTGA AAAGCTAGAC GGCATTCGGG CTCGTTGGGA TGGTAGTAGA
CTACTCACAC GCACGGGTAA CCCCATATTT GCCCCGCAAT GGTTTACCAA CGGCTTACCC
AAACATATTT TTGATGGTGA ATTATGGATT GCCAGGCAAC GCTTTGAAAA AACGGCTTCA
GTGGTGTTAA CCCACGAGCC AGGGGATGAC TGGCGAGAGG TAAAATTTAT GTTGTTTGAT
TTACCCGAGT TTACAGGCGC CTTTAGTGAA CGTTTGCGAA TGCTGGAAGT ATTAGTGCAA
CAAGCGAACC TACCTCACTT GCAAGTCATC CCTCAACAAA AGCTCCATAG TAAATCAGCG
CTTATGCAGT TGCTTGATCA AGTAATTGAT GGTGGTGGCG AAGGATTAAT GCTGCACCAC
GAAGATGCGC TATATACGCC CTCACGGAGT GACAATGTGT TAAAGCTTAA GAAGCATCAA
GATGCTGAAG CCATAGTGTT GGCGCATTTA CCAGGTAATG GCAAGTACCA AGGAATGATG
GGCTCTATTC GTGTGCAAAT GAGCAATGGT AAAGTATTTA AAATCGGCAG CGGCTTTTCT
GATCAAGAAC GCTTGTCACC ACCGCCCATT GGGGCAGTGA TCACTTTCAA ATATTACGAT
TTAACCATTA ACGGGATCCC CAAATTCGCC AGTTATATTC GCCAAAAACC AAGCTATTAA
|
|---|
| Protein sequence | MSVFTPPILI FLISIHSSTV LALTKPEIEL ANRFNDAVNV SDYLVSEKLD GIRARWDGSR
LLTRTGNPIF APQWFTNGLP KHIFDGELWI ARQRFEKTAS VVLTHEPGDD WREVKFMLFD
LPEFTGAFSE RLRMLEVLVQ QANLPHLQVI PQQKLHSKSA LMQLLDQVID GGGEGLMLHH
EDALYTPSRS DNVLKLKKHQ DAEAIVLAHL PGNGKYQGMM GSIRVQMSNG KVFKIGSGFS
DQERLSPPPI GAVITFKYYD LTINGIPKFA SYIRQKPSY
|
|---|
| |