| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0071 |
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| Symbol | |
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| ID | 4171771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 82673 |
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| End bp | 85264 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053069 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_659657 |
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| Protein GI | 109896402 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.213956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA TTCCCGATAA CTTATCCATT GAAGAGTTAC GTGAATTAGT TCCTCAATTA
CAACAACTTA CTGAAAAATA TAAGCATTCA GAAGCCATTC AAAAATCCCT TTTTGATATC
TCTGAATTAG CGAGCTCAGT AGGAGAGTTG TCACGTCTAT ACCCCGCTAT CCACGACATC
ATTGGTCGCT TTATGAATGC CCAGAACTTT TATGTGGCGT TCTACGATCA AGTCGATGAA
GTTGTCGACT TCGTGTATTT TGTAGACCAG TTTGACGAAG TAGCGTTGCG TCAAATCCCC
GCAAGTGAAT TAATGGAAGG TTTTACAGGC TATGTGTTAC GCACCGGTGA CTATTTATTT
TTAACTGAAG AAACCCGCGA GACTCAGCTC AATCAAATTA ACGTAAAACA GATAGGTTCC
GGTCCTGTTG ATTGGATTGG CGTACCTTTA AAGCGTGGTA ACCAAGTGAT TGGCGCCATG
GTGGTGCAAA GTTACGATAA ATCTATTCGC TATAACCAAG AAGATTTAGA CATTCTGCTG
TTTGTTTCGC AGCATATCGT TAATACCGTC GACAGGGTAA AAAGCCGCGA AATGAATGAG
CAAACTATTC GTGAGCGCAC CAAGCAACTT CAGAACATTA ACGAAGAATT ACAAGAAGAA
ATTAACGAGC GCCAAAAAGT AGAATCGCTG CAAAATGCTC TGTTCGAGAT ATCAGAGTTG
TCAGCCTCGG TAGACGGCAA CATGGCGGAT TTTTACGCTT CATTGCATGA AATTATTGCT
CGGCTTATCA GTGCACCCAA CTGTTATATT GCCACTATTA GCGCGGATAA TACCCGTCTT
GAATTTCCTT ATTATTCTGA TGAAATCAAC ACCGTCATAG AATCAAGAGA AATCGGTTTT
GGTCTCACTG AATTCGTGCT TCGCTCTGGC AGTGCTGAGC TGATTAACCC TTCTAAGGTG
AAAGAGCTCA CTGCAAATAA TGAAATAGAT GCCATTACCG CCAAGAATAT GATTGAACAG
AACAATTCGT GGCTAGGCTC TCCACTTGTG GTAGACGGTG AGATATCGGG TGTTATTGCG
ATCCAAAGCT ATAGCCAAAC TGAGCATTAC TCGTTACGTG ATCTGGAACT GCTGCGTTTT
GTTTCCCATC ATATTGCCGT TGCATTAGAG CGTAAACGCT CGTCAGACGC GATCCAGGCG
TATAACCAGC AACTTACTGA GAAAGTTAAA GAGCGCACTG AAGAGCTTAA CAAAGCCAAT
CAATATCTAC AGAAGCAAAT CGAAGAGCGC AAAGCCATTC AGCAGAAACT GGTACACGAT
GCTCATCACG ATGCCTTAAC AGATTTACCT AACCGCACCA TGTTTAATGC TCGATTGAGT
CAGGCTTTGG CCAATAAGAA GCGCTATCAA CATAATAATT TTGCGGTAGT GTTTATTGAT
TTAGACCGTT TCAAACAAAT TAACGACACC ATCGGCCATC ACGCAGGTGA TTCATTCTTG
ATAGAGGTCG CTAGTCGAAT CAACCACTGT ATTCGAGGCC ATGATTTGCT TGCTCGTTTA
GGGGGCGATG AGTTTGTGAT TTTGCTGGAT AATTTCGACT CCCCAGAAGA CGTTGAGATT
ATCTCTACAC GTATTATCGA ATCAATTGCC ACACCATTTG TTTTAGATGG CCGAGAAATT
TTCTCTGGCG CCAGTATTGG TATCGCATAC CTTGAAAGTG GTTACCGCTC AGCGAGTGAA
ATAGTGCGAG ATGCTGACGC CGCTATGTAC CAAGCAAAGT CTCAAGGCCG CGGTCAGTAC
GTAGTGTTTG ATTTAACCAT GCGCAAGAAG CTGCTTGAAG AGTTAGAAAT TGAAACTGAA
TTTCGTAAAG CACTCAAAAA TGAAGCCTTT GATGTCTACT CACATCCAGT CTTTAATATG
ACAGATAGTA CGCACTTATA CGATGAATGC AGAGTTCGCT GGGTACACCC TAAACTGGGT
ATCATGGATC GTGACAGCTT TTGGCAAATT GCTGAACATA GTGGCCTGGT GGTTGAAATG
GACAACTACA TGCTTAGAGC TGCGTATGCG ATGTTGAGCC AGCCACTGAC CTCTTATGCT
AACAACGAGT ATTATAAAGT AGCCGTTAAT TTATCAATCC ATTATTTAAC CCATAGCGAA
GCTGCTGTGC AGCTTATTCA AGATATTAGG GATAGGGGAA TTGATCCTAA GCGGCTAATT
TTTGAGTTTG ACGAGAACGA TTTAAATCGA CGCTCCCAAT TTAGTCTGCC AGCGATTAAG
CATTTAAAAC GATCAGGCAT TAAGTTGGTG CTGGACAATT TTGGCAGTGG CTTGGCATCG
CTAAGTTACT TGTATTCTTA TCCGTTTGAT TTTGTCAAAG TCGATCATCG CTTTGTGAAG
ACTATCCCAA GATCAGAGCG AAATTTAAAA CTCATACAAT CCGTATACGC CATGTCGGAA
CAACTCAGCT TTAGGTTAAT CGTCTCAGGG ATCAGTGACA AAGAGCAAGT AGACCTACTG
CGCTCAGTTG GCTGTCAATT GGGTCAAGGA CCCTATTTAG AAGCCCCATC TCAAGTAACA
CTGCCGATTT AG
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| Protein sequence | MSNIPDNLSI EELRELVPQL QQLTEKYKHS EAIQKSLFDI SELASSVGEL SRLYPAIHDI
IGRFMNAQNF YVAFYDQVDE VVDFVYFVDQ FDEVALRQIP ASELMEGFTG YVLRTGDYLF
LTEETRETQL NQINVKQIGS GPVDWIGVPL KRGNQVIGAM VVQSYDKSIR YNQEDLDILL
FVSQHIVNTV DRVKSREMNE QTIRERTKQL QNINEELQEE INERQKVESL QNALFEISEL
SASVDGNMAD FYASLHEIIA RLISAPNCYI ATISADNTRL EFPYYSDEIN TVIESREIGF
GLTEFVLRSG SAELINPSKV KELTANNEID AITAKNMIEQ NNSWLGSPLV VDGEISGVIA
IQSYSQTEHY SLRDLELLRF VSHHIAVALE RKRSSDAIQA YNQQLTEKVK ERTEELNKAN
QYLQKQIEER KAIQQKLVHD AHHDALTDLP NRTMFNARLS QALANKKRYQ HNNFAVVFID
LDRFKQINDT IGHHAGDSFL IEVASRINHC IRGHDLLARL GGDEFVILLD NFDSPEDVEI
ISTRIIESIA TPFVLDGREI FSGASIGIAY LESGYRSASE IVRDADAAMY QAKSQGRGQY
VVFDLTMRKK LLEELEIETE FRKALKNEAF DVYSHPVFNM TDSTHLYDEC RVRWVHPKLG
IMDRDSFWQI AEHSGLVVEM DNYMLRAAYA MLSQPLTSYA NNEYYKVAVN LSIHYLTHSE
AAVQLIQDIR DRGIDPKRLI FEFDENDLNR RSQFSLPAIK HLKRSGIKLV LDNFGSGLAS
LSYLYSYPFD FVKVDHRFVK TIPRSERNLK LIQSVYAMSE QLSFRLIVSG ISDKEQVDLL
RSVGCQLGQG PYLEAPSQVT LPI
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