| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0070 |
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| Symbol | |
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| ID | 4171770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 80654 |
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| End bp | 82669 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053068 |
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| Product | ATP-dependent DNA helicase Rep |
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| Protein accession | YP_659656 |
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| Protein GI | 109896401 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA ACCCCGGCCA AAACGACGCG GTAAATTACA TCTCTGGCCC TTGCTTAGTG
CTGGCGGGCG CTGGTAGTGG TAAAACCCGT GTTATTACCA ATAAGATTGC GTATCTAGTG
CGCGAATGCG ATATTCCTGC GCGCTATATC GCCGCCGTTA CCTTTACCAA TAAAGCTTCG
CGAGAAATGA AAGAGCGTGT GGCGCAAACG CTTGGGCGAA AAGAAGCTCG TGGGCTAAAG
GTCTCTACTT TCCATACTTT GGGCCTGAGA ATTATCAAAA CTGAAGTAAA AACCCTAGGC
TTAAAAGCAG GGTTTTCCTT ATTTGATGAT AAAGACAGTA TGGCGCTGCT CAAGGATTTG
ACCGATGTGG AGCTGGGCGG CGACAAAGAA CAACTGCAAC TATTGCAAAG CTGCATTTCT
AATTGGAAGA ATGATTTGTT GCTGCCAGAG CAATTACTTA AACGCACGTC CTCAGCGGGG
GAAGCGGAGT TTGCTGAGTT TTACCAGCGT TATCAAAATC ACTTACGGGC GTACAATGCG
TTAGATTTTG ATGATTTGAT CCTGTTACCG ACTTTATTGC TCAAGCACAA TGAAACAGTG
CGCCAGAAAT GGCAAAGCCG AATTCGTTAT TTGTTGGTGG ATGAATATCA GGATACCAAC
ACCAGTCAAT ACGAGTTAGT GCGCTTATTG GTGGGTCAGC GTGCGCGCTT CACCGTGGTT
GGGGACGATG ATCAGTCGAT TTATTCGTGG CGTGGGGCTA GGCCACAGAA CTTGGTGTTA
TTGAGCAAAG ATTTCCCTGA CTTGAGGGTG ATTAAGCTTG AGCAAAACTA TCGTTCATCA
GGGCGCATTT TGCATTGCGC CAATATTCTG ATCCAAAACA ACCCGCATGT GTTTGAGAAG
AAGTTATTCT CTGAATTAGG CTACGGTAGT GAGCTTCGCA TCATCACTGC TAAAAATGAA
GAACATGAGG CCGAGAGGGT GGTCGCTGAA CTTATTGCTC ACAAGTTTAT GCAAGGTACA
AGTTTCAAAG ATTACGCCAT TTTATATCGA GGAAACTTCC AATCTCGCTT GTTTGAAAAA
GTCCTTATGG CCAACCGTAT CCCTTATAAA ATAAATGGTG GCACTTCGTT TTTTGGGCGG
ACTGAAGTGA AAGACATCAT GGCGTACTTA CGCCTATTGG TGAATCAAGA TGATGATAAT
GCCCTGTTGC GCATCATCAA CACACCCACC CGCGGTATAG GACGCGTCAC GTTAGAAAAG
CTTGGAAATT ACGCGAACGA AAATCACATT AGTATGTTTG AAGCGGCGTG TTCGCCGATG
TTGAGCACCG TGATATCCGG TAAGTCTCTT GAGTCGGTAG AGCGATTCGC CCGCTGGATA
GTGGAACTGT CTGATGAAAT AAAACGAAGC GACAGTATTG CAGCCATCCG CCAAATGATT
AAAGACATGG GTTACGAAGA GTGGCTCTAT GAAAGCAGTA CCAGCCCTAA AGCGGCCGAA
ATGGGCATGG GCAACATCAG TACGTTATTT GGCTGGGTTA GCGATATGCT TGAAGGTGGA
GAGCTAGACC CACCTATGAG CCTACAAGAG GTGGTCAACA GACTCATTCT GCGCGACATG
ATGGAGCGCG GAGAAGACAC AGAAGAAACG GATCAGGTGC AACTTATGAC GTTGCACTCA
TCTAAAGGGT TAGAGTTTCC TTACGTATTT ATGGTGGGTA TGGAAGAGGG GTTGTTGCCC
CATCAAAGTA GTATCGATGA GGACAATATC GAGGAAGAGC GTCGTTTAGC CTACGTGGGG
ATCACGCGGG CTCAGAAGGA GTTGTTTTTC ACCTTAGCCA AAGAGCGTCG CCAATATGGT
GAAGTGATAC AACCTGAGCC TAGTCGCTTT TTACACGAAC TACCCGCTGA TGATATTCAC
TGGGAAGTGA AGAAACCTAA AGTGAGCGCC GAGGCCCGCC AGCAAAAGGG CCAAACAGGC
ATTGCTCACC TGCGGGATAT GATGAACAAA AAGTAA
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| Protein sequence | MKLNPGQNDA VNYISGPCLV LAGAGSGKTR VITNKIAYLV RECDIPARYI AAVTFTNKAS
REMKERVAQT LGRKEARGLK VSTFHTLGLR IIKTEVKTLG LKAGFSLFDD KDSMALLKDL
TDVELGGDKE QLQLLQSCIS NWKNDLLLPE QLLKRTSSAG EAEFAEFYQR YQNHLRAYNA
LDFDDLILLP TLLLKHNETV RQKWQSRIRY LLVDEYQDTN TSQYELVRLL VGQRARFTVV
GDDDQSIYSW RGARPQNLVL LSKDFPDLRV IKLEQNYRSS GRILHCANIL IQNNPHVFEK
KLFSELGYGS ELRIITAKNE EHEAERVVAE LIAHKFMQGT SFKDYAILYR GNFQSRLFEK
VLMANRIPYK INGGTSFFGR TEVKDIMAYL RLLVNQDDDN ALLRIINTPT RGIGRVTLEK
LGNYANENHI SMFEAACSPM LSTVISGKSL ESVERFARWI VELSDEIKRS DSIAAIRQMI
KDMGYEEWLY ESSTSPKAAE MGMGNISTLF GWVSDMLEGG ELDPPMSLQE VVNRLILRDM
MERGEDTEET DQVQLMTLHS SKGLEFPYVF MVGMEEGLLP HQSSIDEDNI EEERRLAYVG
ITRAQKELFF TLAKERRQYG EVIQPEPSRF LHELPADDIH WEVKKPKVSA EARQQKGQTG
IAHLRDMMNK K
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