| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0062 |
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| Symbol | tdh |
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| ID | 4171896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 74002 |
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| End bp | 75024 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053060 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_659648 |
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| Protein GI | 109896393 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGTCAC TCGCCAAGCT CAAGTCAGAA AAAGGCATTT GGTTGCATGA TAGCGAAATG
CCTACTGTTG GTCATAACGA CATACTGATT AAAATTCGTA AAACCGCTAT TTGCGGTACG
GATATGCACA TTTATAACTG GGACGAGTGG TCTCAAAACA CCATACCCGT GCCTATGGTA
GTGGGACATG AGTACGTGGG TGAAGTGGTT GAAATAGGTG AGGAAGTGCG CGGTTTTGCT
ATTGGCGATC GCGTATCTGG TGAAGGGCAT ATTACTTGTG GGCATTGCCG TAACTGTCGT
GCTGGGCGTC GTCACTTGTG TCGTAATACC TCTGGCGTTG GCGTCAACCG AGCGGGTGCT
TTTGCAGAGT ATTTGTCTAT TCCTGCATTC AATGCATTTA AGATCCCAGA CAATATCTCT
GATGACCTCG CTGCTATTTT TGACCCCTTT GGTAATGCCG TACATACCGC ATTGTCGTTT
GATTTAGTCG GTGAAGATGT ACTAATAACA GGGGCTGGGC CCATCGGCAT TATGGCTGCT
GCTGTTGCGC AACATGTAGG CGCACGTCAC GTCGTCATTA CTGATGTAAA TGAATACCGC
CTAGATTTGG CTCGTAAAAT GGGTGCCTCG CGCGCTGTGA ACGTGGCTAA AGAGAGCCTG
AAAGACGTTA TGAATGATTT AGGCATGTCT GAAGGCTTCG ACGTTGGGCT TGAAATGTCG
GGCGTGCCAG CAGCATTTCG CGATATGCTC GATAAAATGA ATCACGGCGG AAAAGTGGCC
ATGTTAGGTA TTCCTTCAGG CGATGTGGCT GTTGATTGGA ATAAAGTCAT TTTTAAAGGG
CTAGTGATCA AAGGCATTTA TGGCCGAGAG ATGTTCGAAA CCTGGTACAA GATGGCGAGC
CTCATTCAAG GTGGTTTAAA CTTGGCGCCA ATTATTACCC ATCAATTTAA TATCGATGAG
TTTCAGCAAG GATTTGATAC CATGGGCTCC GGCCAATCTG GCAAAGTCAT ATTAAACTGG
TAA
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| Protein sequence | MKSLAKLKSE KGIWLHDSEM PTVGHNDILI KIRKTAICGT DMHIYNWDEW SQNTIPVPMV
VGHEYVGEVV EIGEEVRGFA IGDRVSGEGH ITCGHCRNCR AGRRHLCRNT SGVGVNRAGA
FAEYLSIPAF NAFKIPDNIS DDLAAIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVAQHVGARH VVITDVNEYR LDLARKMGAS RAVNVAKESL KDVMNDLGMS EGFDVGLEMS
GVPAAFRDML DKMNHGGKVA MLGIPSGDVA VDWNKVIFKG LVIKGIYGRE MFETWYKMAS
LIQGGLNLAP IITHQFNIDE FQQGFDTMGS GQSGKVILNW
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