| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0060 |
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| Symbol | |
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| ID | 4171894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 70215 |
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| End bp | 72662 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053058 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_659646 |
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| Protein GI | 109896391 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCT TCGTCAGTTT ACCGTGGAAA ATCATGGGTC TATTGATTGG TTTTTTACTG
ATTGCCAGCG TGTTGTTGAC CTTCATTTGG ATTGATAAAA ATAACCAGGA TTATCTAAGT
CAGCATCAGG CGTTACATGA TGAAGATCTA AGTCAAATGC ACCTGATCCG CGACATGTTG
AGTAATCGTC TCGAGTTATG GTTTGAGTCG TTTATTCACC TGCATGAAGA CATCACTGAT
AATCCGCAAG CGACTGCCGA TTTTATTAAC GAAGAATTTG ATTACTTACA GTTGAATTGG
CAAGTTAAGG ATCTTTGGTT GCTCGACAGC GAGTACAAAG TCATATTCGC TAATCATCAA
CATGTGCCAG AATATGTAAC GGCGAGTGCA CAGCAAACAC TGCAAAATCA ATCATCTACG
TCCAATATTT TATGTGCACA GTCATGTTTT CAGCTTATAA GCATGCCAAT TTTGGCTGCC
AACGGTGAGC TTCTGGTATT GACCGCTACC ACCTCTTTGC TGGAAATGAT GGCTGCCTTG
AATCGTTCAA CGCTGGCTGA ACTTGCCTTA GTCGCAAATA TACATTCCCT CGAGCTGGCT
TCTCTTCGAG ACGCACAGAT ACAGCCGCCC ATCTCAAATA TTAGACGCCA AGAACTTAGC
GCATTACTCA AGCTAATTCC TGGGGGTATT ACATTCGATA TGGTGCTGGA TAAAGGCTAC
CGATTGGTGG TCAATGAGCA GGCATATTTG ATTAATTTAC TGCCCGTTGA TGAAAAGGTG
ACTGACCCTG CATATCTGCT TGCCGTGCAC GATATCAGCG ACGAGTGGGC AAGGCATGAT
AGTTATCAAT TCGGTGTCAT TATCATCTCA GCTATTACAG TGGCACTTTG TATTCTGACG
TTCTTTTTAA TGGCCGAGCG GCTGCGTAGA CGCCTACTTA TCGTTGCAAA GCGTTTACCG
CTTTTAGCAC AGAAGGAATA CGACGAATTT AACGCCATGC AATTTCCACA TAGTAGACTG
TTTTTAGATG AAATAGATGA GGTCCAACGC TCTTCAAATT TATTGGGTGA ACAGCTTGAG
TCGATGGATG TCAAGATAGA ACAAAACACC CGAGAACTTG AAAATATAGC CATGTACGAC
CGGCTTACGG GGCTTCCAAA TCGAAATATG CTGAATTTTG TGCTGCGCAA AAAAATAGCG
TCTTTAGCGC GTAACCCTGA ACCTTTGGTC GTTATTCTAT TGGACTTCGA TAATTTTAGG
AAAATTAATG ACAGTTATGG TCACGGCATT GGTGATGAGT TCTTGATTAT CGTCGCCCAG
CGATTGCGCA GCAATCTGCG CGAATCAGAC GTGATCAGCC GCTTCGGTGG TGATGAATTC
GTCATTGTGC TGCAAGAGGT TGATGAGGTC AGTAATGCCA TGACCTTAGC CGAAAAGCTG
GTGACTAAGT TTAGAGAGCC TATTGAGATC GGCGCTCAAC GTTTTTATAC CTCTGTGAGT
TTGGGGATCA CCTCTTGTGA CGAACAACAT CTCACTGTGG ATGACTTGGT GCGCCAAGCG
GATATTGCTA TGTATGCTTC AAAAGATGCT GGCGGAGACC GCTTTACACT TTTCAATGAA
GGCATGAGCA CGCGGGTCAT GCGCCATATT GAAATTGAGC ATGATATTCG AGACGCACTG
CAGCAAGAAC AGTTCAAGTT CGCGCTACAA GCACAAATAG ACATTGGTAC CGGCAAGCTG
GTGGGATTCG AGGCACTGAT CCGTTGGCTG CATCCGAAAA ATGGTTACAT CATGCCTGAT
GAATTTATTC CTATTATGGA AAATTCTGAA AGCATGATCA CCTTAGGTTA CTGGGGTATA
AAGCGCGCGT TTGCTATTTT GGCACATCTT GAAAGCATGG GACTGAGTGG GTTGAGAGTA
GCAGTAAACT TATCTGCGAG TCAGTTTTTA GATCCTAATT TAATCAATTT TATGCGCGAA
CAATTAGCAA AAAGCGAGCA AGGTGCAGAG CAAATTGAAT TGGAATTGAC TGAGCGCACA
GTGGTTGCTG ACATCAGTCA TACGCTGCGG ATCATGTATC AGCTCAAGGA ATTAGGGTTT
AGTTTTTCTA TTGATGATTT TGGCACAGGG TATTCGTCTC TCGCATACCT ATCTCAGCTA
CCGGTAGATA TTATTAAAAT CGACCGCAGC TTTATATCCG GTATGAGTGT AAATAGCGCA
GACAAGCAGA TCGTGAAATC AACCATCGCT ATGGTCAGAA AACTAGGTAT GAAGGTTGTC
GCTGAAGGAG TAGAGACAGC GGAGCAATTG AATACATTAG GCGATATGCA TTGTGATATT
GCCCAAGGTT ATTATATTTC AAAACCCCTT TTAGAGGATG ATTTGTACCA AAAGCTCCCT
TCAAAAATAA AGGAAGGTGT CTGGAAGAAC TTCGATTTGT CATTTTAA
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| Protein sequence | MRIFVSLPWK IMGLLIGFLL IASVLLTFIW IDKNNQDYLS QHQALHDEDL SQMHLIRDML
SNRLELWFES FIHLHEDITD NPQATADFIN EEFDYLQLNW QVKDLWLLDS EYKVIFANHQ
HVPEYVTASA QQTLQNQSST SNILCAQSCF QLISMPILAA NGELLVLTAT TSLLEMMAAL
NRSTLAELAL VANIHSLELA SLRDAQIQPP ISNIRRQELS ALLKLIPGGI TFDMVLDKGY
RLVVNEQAYL INLLPVDEKV TDPAYLLAVH DISDEWARHD SYQFGVIIIS AITVALCILT
FFLMAERLRR RLLIVAKRLP LLAQKEYDEF NAMQFPHSRL FLDEIDEVQR SSNLLGEQLE
SMDVKIEQNT RELENIAMYD RLTGLPNRNM LNFVLRKKIA SLARNPEPLV VILLDFDNFR
KINDSYGHGI GDEFLIIVAQ RLRSNLRESD VISRFGGDEF VIVLQEVDEV SNAMTLAEKL
VTKFREPIEI GAQRFYTSVS LGITSCDEQH LTVDDLVRQA DIAMYASKDA GGDRFTLFNE
GMSTRVMRHI EIEHDIRDAL QQEQFKFALQ AQIDIGTGKL VGFEALIRWL HPKNGYIMPD
EFIPIMENSE SMITLGYWGI KRAFAILAHL ESMGLSGLRV AVNLSASQFL DPNLINFMRE
QLAKSEQGAE QIELELTERT VVADISHTLR IMYQLKELGF SFSIDDFGTG YSSLAYLSQL
PVDIIKIDRS FISGMSVNSA DKQIVKSTIA MVRKLGMKVV AEGVETAEQL NTLGDMHCDI
AQGYYISKPL LEDDLYQKLP SKIKEGVWKN FDLSF
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