Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0056 |
Symbol | |
ID | 4171890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 65951 |
End bp | 67027 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053054 |
Product | glycosyl transferase, group 1 |
Protein accession | YP_659642 |
Protein GI | 109896387 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAAATG ATGTGACGAA AACCAGTAAG CAAGATGAAG TTGAGTTGAT TCTGGGAAAT TCGAATTCCA ATTTTTCGGG TGTGACTTCA ACCATGTTGC AGGTCATGTC TTATCAACAA AAGTTGATTA ATTTGCGTGT CATGGGTAAG CATTTTTTAC CTGATCAGAG TCAAGCTATG ACATTCTGGC AGGTGGTGAA GATGTGTCGT AAGCCGCTGA GCAATGGTAA GTACCGTGTT TTTCATGCTC GCCGTGTAGA TGAAATGATC CAAGCTGTGC TGTTGAAATA TGTATTCGGT GCCAAAATAA AAATGGTCTT CAGTTCTGCT GCTCAGCGCT TTCGTTCAGG CTCTACCTTA TGGTTAACCC GCAAAATGGA CGCTGTGGTG GCCATTAGTC AGTCATCAGC AAAGTATTTG GCTGAGCCAC CCGATGCGAT TATTCCTCAC GGTATTCAAA TTGAGAACTT CGCCCCAGCT CCGAACAAAG GGCAAGCATG GCAGGATTTA GGCTATGGTG GAAAATACGG TATCGGTATT TTAGGCCGTG TGCGCAAACA AAAAGGTGTT CATCTGTTCG TCGATGCGTG CATCGAAGTG CTGCCGAAAT ACCCGGACTA CACAGCGGTT GTAGTGGGGG CTATCTCATC TAGTCATCAA GAATTTGTTG ATGAATTAAA AGCAAAAATC GATAAAGCAG GTTTGAGCGA GCGTATCATC TTTACTGGTG AACTGCCGTT TGAGCGCATT CCGCCCATTT TTAGTGCTTT ATCTATGGTA TCTGCGTTGA GCGACAATGA AGGCTTTGGT TTAACTGTAC TTGAAGCCAT GAGTTGCAGT GCTGCGGTGT TAGCGACGCA AGCAGGCGCG TGGGAAGAGA TCATTCGCGA AGACATAGAT GGCCACGTAG TGCCTGTGAA TGATTTACCC GCGGTGACAG CAAAAATGGA TTCACTACTA TCAGATCCAG AAAAATTGAA ACAAAAAGGC TTAGCTGGCC GTGAACGGGT ATTGGCTCAT TACACGGTAG AGCGGGAAGC GAAAGCCTTG GTTGATTTGT TTAAAGGGTT GCAATAG
|
Protein sequence | MENDVTKTSK QDEVELILGN SNSNFSGVTS TMLQVMSYQQ KLINLRVMGK HFLPDQSQAM TFWQVVKMCR KPLSNGKYRV FHARRVDEMI QAVLLKYVFG AKIKMVFSSA AQRFRSGSTL WLTRKMDAVV AISQSSAKYL AEPPDAIIPH GIQIENFAPA PNKGQAWQDL GYGGKYGIGI LGRVRKQKGV HLFVDACIEV LPKYPDYTAV VVGAISSSHQ EFVDELKAKI DKAGLSERII FTGELPFERI PPIFSALSMV SALSDNEGFG LTVLEAMSCS AAVLATQAGA WEEIIREDID GHVVPVNDLP AVTAKMDSLL SDPEKLKQKG LAGRERVLAH YTVEREAKAL VDLFKGLQ
|
| |