| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0055 |
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| Symbol | |
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| ID | 4171889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 65078 |
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| End bp | 65797 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053053 |
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| Product | 3-deoxy-D-manno-octulosonic-acid kinase |
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| Protein accession | YP_659641 |
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| Protein GI | 109896386 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAACA TTCAGCAAAC ATCTAAAGAG CGCAGCACCA TTATATTTGA TGCTGAAATA
TTCGCAGCCC CTGATTTGCA TATTTTTGAT GGTCACTACT GGCAATCGAA ACAGCAATTA
ACCGGCAGTG CTACCGGACG CGGCACAACG TATTTTTTTA GGCATAAAAA TAACGAATAT
GTTTTGCGCC ATTATCGACG CGGTGGCTTA ATCGGCAAGT TAATTGAAGA CAGCTATCTT
TTTAGAGGTC TGTCACGCAC GAGAGCATGG CGCGAGTTTA CTCTTCTAGA ACAGATGCAC
AGTCTTGGTT TGCCCGTACC TGAGCCTGTC GCAGCACAAG TAACACGACA CAATGTGATG
TACCGAGGCG ACATCATTAT AAAGCGTATT CCCAATAGCC AAGATATGTT TAGCCATTTA
TGTGAAGCGC CGCAACCTCA AACCACTTGG CAAGCCATTG GCACCTGCAT TCGCCAATTT
CATGATCACA ATGTATATCA TCACGACTTA AACATTCACA ATGTTATGCT CGATGGTGCA
GGTAAAATTT GGCTTATCGA TTTTGATAAA TGTGCCATAC ATGCTAGCAA TAATTGGAAA
AAAGCTAATT TAGACCGACT CTTACGCTCA TTGCATAAAG AGCAAGCCAA ACAACAAACC
TTCCATTTCA ATGAGCAAAA TTGGCAAGTT TTGCTGTCCG CCTACGGTGA GCCAGCTTAA
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| Protein sequence | MPNIQQTSKE RSTIIFDAEI FAAPDLHIFD GHYWQSKQQL TGSATGRGTT YFFRHKNNEY
VLRHYRRGGL IGKLIEDSYL FRGLSRTRAW REFTLLEQMH SLGLPVPEPV AAQVTRHNVM
YRGDIIIKRI PNSQDMFSHL CEAPQPQTTW QAIGTCIRQF HDHNVYHHDL NIHNVMLDGA
GKIWLIDFDK CAIHASNNWK KANLDRLLRS LHKEQAKQQT FHFNEQNWQV LLSAYGEPA
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