Gene Patl_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0046 
Symbol 
ID4172891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp58059 
End bp58733 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content50% 
IMG OID638053044 
ProductDNA repair protein RadC 
Protein accessionYP_659632 
Protein GI109896377 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.178856 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAA CCCAATGGCC TGCCCATGAA AGACCAAGAG AAAAGCTGCT CACCCAAGGG 
CCCGATGCCT TGTCTGATGC GGAGCTATTG GCCATATTTT TGCGAACGGG CATCAAAGGA 
TTAAGTGCCG TTGATTTGGC GCGCAACCTT CTAAATACCT TTGGCTCACT GCGGGGGCTA 
ATCAGTGCGA GTCAGCAGGA TTTCTGCTTA GCCAAAGGGT TAGGGGAAGC GAAGTTTGTG 
CAACTGCAAG CATCCATCGA GTTAAGTCAG CGCTTTTTTG CCGAACAATT ACAGCGTGAA 
ACCGTGTTTA ACAGCGCTCA ACAAACCAAG CACTTTTTGA TCGCCCAATT GCGTGACGAG 
CCCAATGAGG TGTTTGGCAT GCTACTGCTA GACAGTCAGC ACCAATTGAT CAAATTTCGC 
AAAATGTTCT TCGGCACCAT TGATAGCGCA TCGGTCTATC CTCGAGTTCT AGTGAAACAG 
GCGCTAGAAG ATAACGCTGC TGCTGTGATA TTGACCCACA ATCATCCGTC AGGCGTGGCT 
GAGCCGAGTC AGGCCGATGA GCACATCACC GCGAGGATTA TCAGCGCGAT GAGCTTACTG 
GACATCAAAG TGCTTGATCA TCTTGTGGTT GGGGATGGTG TTGCCGTATC GTTTGCCGAG 
CGAGGTTTGA TTTAG
 
Protein sequence
MKITQWPAHE RPREKLLTQG PDALSDAELL AIFLRTGIKG LSAVDLARNL LNTFGSLRGL 
ISASQQDFCL AKGLGEAKFV QLQASIELSQ RFFAEQLQRE TVFNSAQQTK HFLIAQLRDE 
PNEVFGMLLL DSQHQLIKFR KMFFGTIDSA SVYPRVLVKQ ALEDNAAAVI LTHNHPSGVA 
EPSQADEHIT ARIISAMSLL DIKVLDHLVV GDGVAVSFAE RGLI