Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0031 |
Symbol | |
ID | 4173576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 33931 |
End bp | 34749 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053025 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_659618 |
Protein GI | 109896363 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00161886 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCGAT ACGCCGTTTT TGGTAATCCC ATTGAGCACA GTAAATCCCC TTTGATCCAC ACGCTGTTCG CTAAACAGAC CCAACAAGTC ATTGAATACG GACGTCAACA ACCCGATTCT AACGGGTTCA ATGATGCAAT CAATGCATTC TTTACCGAGG GCTTCATTGG AGCAAACGTT ACTTCCCCAT TCAAACTTGA CGCATTTCGC TTTGCCGATG AACTGACACC ACGCGCTAGA GCTGCTGAAG CGGTCAATAC GCTATATAAG CGCCAAGATG GTTCAATTTT GGGTGACAAC ACCGATGGGG CTGGCTTAGT TCAGGATCTT CAGCGCTTAT GGGGGGAGTT AAACGGAAAG CGTTTATTGT TGATTGGCGC TGGTGGGGCG ACTCGTGGAG TCATTCTTCC TCTACTCACT GCTAAAGTAC AAAATATTCA TATTGCTAAT CGTACGGCGA GCAAAGCCCA GCAGCTAGCG GATAGGTTTA AAAAAGAAGG GGTTATTACT GCTTCAGGCT TTAACGACTT ACCCGAAATA CAGTTCGACC TGATTGTTAA CTGTACCTCT TCGAGCTTGG ATGGAGGGTT ACCCGAAATC ACTCCGAGTA TTTTTATCAA TGCATCATAT GCTTATGACA TGACGTATAA AGCACAGGCA ACATCTTTTA TGGTCTGGGC TCAAGAATGT ACCCCTAGTA TTAGAACGGC CGATGGACTG GGCATGTTAG TGGGTCAAGC AGCCGAAAGC TTCTATGTTT GGCGAAAAGT TCGACCCAAA ATAGAACCTA TTATTGAAAT TGTGCGAGAA ATGCTGTGA
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Protein sequence | MDRYAVFGNP IEHSKSPLIH TLFAKQTQQV IEYGRQQPDS NGFNDAINAF FTEGFIGANV TSPFKLDAFR FADELTPRAR AAEAVNTLYK RQDGSILGDN TDGAGLVQDL QRLWGELNGK RLLLIGAGGA TRGVILPLLT AKVQNIHIAN RTASKAQQLA DRFKKEGVIT ASGFNDLPEI QFDLIVNCTS SSLDGGLPEI TPSIFINASY AYDMTYKAQA TSFMVWAQEC TPSIRTADGL GMLVGQAAES FYVWRKVRPK IEPIIEIVRE ML
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