Gene Patl_0030 details

Gene Information

• Locus tag: Patl_0030
• ID: 4173575
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 33101
• End bp: 33784
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638053024
• Product: OmpW
• Protein accession: YP_659617
• Protein GI: 109896362
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3047] Outer membrane protein W

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.109784
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTCT TCAAAATAGT GTTATCCAGT TTAGCTTTAA CGGCCACCAT AATGGGCACA 
GCCAATGCCT ACGAACCAGG TGACATCATA GTACGAGCAG GTTTAACGAC AGTCGCTCCG 
GATGAATCAA GTTCAAATGT AACGGTGCAA AGCGTTGGAA ATGTGGGCAT GGGAGCATCA 
GTAAACAACA ACACTCAGTT GGGTCTGAAT GCGGTCTATA TGTTTACCAG CAACATTGGC 
TTAGAATTAT TAGCAGCCAG CCCATTCACA CATGATATTA CGTTGAATAA CACACTCGAT 
AATGAGCTAG GTTTAGGTGA CGGTAAATTA GCTGAAAGTA AACAATTACC TCCGACACTT 
AGTGCTCTTT ATTACTTCCC CGTTTCTGAA ACCATACAGC CGTATGTGGG GATTGGACTA 
AACTACACAG TTTTCTTCGA TGAGCAATTT GTGGGCAATA GAGAAGCTCA GTCTTTTAAT 
AATTTAAGTC TTGATGAGTC CTTTGGTATT GCCGCGCAAA TAGGTATGGA TTACAAGTTA 
GATGAACACT GGTTAATAAA TGCGTCGGTG CGCTATATCG ATATTGATAC AGAAGCAAAG 
TTTGACGTTT TGGATTTGCC TGCTCAGGTA TCAGTCGATA TCGACCCATG GGTATATTCG 
CTCATGCTAG GCTACAAGTT TTAA 

 

Protein sequence

MKVFKIVLSS LALTATIMGT ANAYEPGDII VRAGLTTVAP DESSSNVTVQ SVGNVGMGAS 
VNNNTQLGLN AVYMFTSNIG LELLAASPFT HDITLNNTLD NELGLGDGKL AESKQLPPTL 
SALYYFPVSE TIQPYVGIGL NYTVFFDEQF VGNREAQSFN NLSLDESFGI AAQIGMDYKL 
DEHWLINASV RYIDIDTEAK FDVLDLPAQV SVDIDPWVYS LMLGYKF