| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0028 |
|---|
| Symbol | |
|---|
| ID | 4173573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 31408 |
|---|
| End bp | 31971 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053022 |
|---|
| Product | SUA5/yciO/yrdC-like |
|---|
| Protein accession | YP_659615 |
|---|
| Protein GI | 109896360 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0009] Putative translation factor (SUA5) |
|---|
| TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA ACCACACTGA CGACCCTTTT TTACTCGACT ATTTAGCTGG GAAGGTCTTT
GCCTATCCGA CGGAAGCCGT CTTTGGCCTA GGATGCGATC CTGATAACGA ACAGGCGGTC
AACAAACTAC TTGCTTTAAA GCAACGCGAT GTCAGCAAGG GATTGATTCT GGTCGGGGAT
AACTATTCAC AGTTATTGCC ATATGTAGAT GACAGCGCCA TCAAAATGAC TAAGCGCACC
GAGATATTTT CAAGTTGGCC TGGACCGATA ACCTGGCTGC TTCCTAAATC GAAAACAGCA
CCGAGTTGGG TGACAGGGGA GTCTGAATTC ATTGCTGTCA GAGTCAGTGC TCACCCACTC
ATAAAGGATC TTTGTCAGCG AGCAAATAAG CCGCTAGTTT CTACAAGTGC AAACACTGCT
GGTCATCCGC CAGCGCTGAG TGCCGATGAG GTTACATCTT ATTTTTCTAA CCAAGTGATC
TTAATCGACG GCTCGCTTGG TGGATCCCGC AGCCCCAGTA AAATTCGTCA CGGCCATAGT
GGCCAAACTA TTAGAGATAA TTAA
|
|---|
| Protein sequence | MTANHTDDPF LLDYLAGKVF AYPTEAVFGL GCDPDNEQAV NKLLALKQRD VSKGLILVGD
NYSQLLPYVD DSAIKMTKRT EIFSSWPGPI TWLLPKSKTA PSWVTGESEF IAVRVSAHPL
IKDLCQRANK PLVSTSANTA GHPPALSADE VTSYFSNQVI LIDGSLGGSR SPSKIRHGHS
GQTIRDN
|
|---|
| |