| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0024 |
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| Symbol | |
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| ID | 4173569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 28001 |
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| End bp | 29080 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053018 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_659611 |
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| Protein GI | 109896356 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAATA ATCTACTTCG CTTGAGCCTT GTGCTTCTAC TTTCGCCATT TTGGGCGCAT
GCGGACGTGA TAAAACTAAA AGAGAACGCT CCACGTACTT ATGTCGTAAA ACATGGCGAC
ACATTGTGGG ATATCTCTAA CCTTTTTCTG CACAAACCTT GGTATTGGCC GCAAATTTGG
CGAACGAATA CGCAAATTAT CAATCCGCAT CTCATTTTTC CGGGGGACCA ATTACGCCTA
ACGGTTAGTG CCGCGGGAAA GCCGTTCGTC GATTTAATTC GTGGCGAAAA AAAACCGTAT
CTAGTGCGCT CACCCTCAGC CACACAAATC AATAAATCGA ATCAACCTAT TGCTGTACTC
CCTTGGCATG AGATAGAACC TTATTTTAAT CAAGAGCTTG TGCTGAGTGA AAAGCTCTAT
GCTGAATTAC CATCTATTGT CGGTAGCACG AAAGGAACTG AATACTTTTC AAACAATGAT
CTGGTGTTGG TTAATCATGA AAAATTGCCA TTGGGTCATT ATCAGGTTGT GCGTAAGCAG
CAGTCTCTAT TCAGTGCCAA AGGTGAATTT TTGGGTGTGC AAGTTCGCCA TGTGGCCGAC
GGGCAGGCAT TAGCTCCAGC TTTACCTAAG CAATCCTTAG TGACGTTGTC ATCCGCTAAT
TTGGAAGTAA AGCGAGGTGA TAAACTCTTA AAAGAAACCC CTAATAATAA TGTTGAAGCG
TTGCTCAATA TAACAGCAGC GATAGAGCAA AGAGGAAATA TTATTGCTGA TGTATCCCAA
TACCAATTAT CAGGCAAATT TAGCGTTGTG GTTATCGATG TTGGCAGCAG TAATATTAAA
CGCGGCACGG TAATGGGCAT TTATCAACAA GGAGCCGCAG TGATCGATGG AGAGCCGCCA
AAGTATCTCG CTGAGGCTCA AACGATTGAG AAACTGTTTG CAGAAAATGA TGTTTTGCCC
CAGCCGTGGA TGAAGGTGGG AGAACTTTTG GTCTTTAGCG TCTTTGACAA GGTAAGTTAT
GCACTCGTCA CGCGTTCGTC TACAGTTATT CGAAAAGGCG CTATCGTTGC AAAACCGTAG
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| Protein sequence | MLNNLLRLSL VLLLSPFWAH ADVIKLKENA PRTYVVKHGD TLWDISNLFL HKPWYWPQIW
RTNTQIINPH LIFPGDQLRL TVSAAGKPFV DLIRGEKKPY LVRSPSATQI NKSNQPIAVL
PWHEIEPYFN QELVLSEKLY AELPSIVGST KGTEYFSNND LVLVNHEKLP LGHYQVVRKQ
QSLFSAKGEF LGVQVRHVAD GQALAPALPK QSLVTLSSAN LEVKRGDKLL KETPNNNVEA
LLNITAAIEQ RGNIIADVSQ YQLSGKFSVV VIDVGSSNIK RGTVMGIYQQ GAAVIDGEPP
KYLAEAQTIE KLFAENDVLP QPWMKVGELL VFSVFDKVSY ALVTRSSTVI RKGAIVAKP
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