| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0023 |
|---|
| Symbol | def |
|---|
| ID | 4173568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 27253 |
|---|
| End bp | 27762 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638053017 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_659610 |
|---|
| Protein GI | 109896355 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATAT TAGATGTATT GAGATTTCCT GATGAGCGCT TGCGCACAGT TGCCACGCCT
GTTGATAAAA TAGACAGCTC CATAAAGACA CTGGTGAGCG ACATGCTTGA AACCATGAAG
GATGAAAATG GTATTGGGTT AGCAGCAACA CAAATAAACG TGCACAAGCG CGTAGTGGTC
ATTGACGTTT CTGAAGAGCA AGATAAACCA CAAGTGTTTA TTAATCCTGA GATTACGCAC
ATGGATGGCA CAACGATCAG TGAAGAAGGC TGCTTGTCTG TTCCTAATAA CTACGCCAAA
GTTGAGCGAG CAGAGAAAGT AACCGTAAAA GCGTTAGACG AAAATGGCGA TGCATTTACG
TTGGATGCAG ATGGCTTACT GGCTATTTGT ATTCAACATG AGTTGGATCA TTTAAAAGGT
AAACTTTTTG TAGATTACTT GTCGCCACTT AAGCGCCAGC GTATCCGAAC CAAATTAGAA
AAAGAAGCCC GCTTAGCAGC CAAGGCTTAA
|
|---|
| Protein sequence | MAILDVLRFP DERLRTVATP VDKIDSSIKT LVSDMLETMK DENGIGLAAT QINVHKRVVV
IDVSEEQDKP QVFINPEITH MDGTTISEEG CLSVPNNYAK VERAEKVTVK ALDENGDAFT
LDADGLLAIC IQHELDHLKG KLFVDYLSPL KRQRIRTKLE KEARLAAKA
|
|---|
| |