| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0015 |
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| Symbol | |
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| ID | 4171840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 16229 |
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| End bp | 19015 |
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| Gene Length | 2787 bp |
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| Protein Length | 928 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053009 |
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| Product | DNA polymerase I |
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| Protein accession | YP_659602 |
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| Protein GI | 109896347 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.853211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA CTGATCCTGC TACTACGCCC GTCATTCCCA ATAACCCGTT TATATTAGTC
GACGGATCAT CTTATTTATT TCGTGCTTTT CACGGCATGC CCCCTTTGAC TAATTCTAAA
GGTCAAGATA CCGGCGCGAT CTACGGCGTG ATTAATATGT TGCGTAGCTT GATCAAGCAG
TTTAGCCCTA CGCATATGGC AGTTGTATTT GATGCTAAAG GTAAAACATT TAGGGATGAT
ATTTATAAGG AATATAAGGC TAATCGTCCC TCCATGCCTG AAGAACTGCG CAGCCAAATT
GAACCTTTGC ATAAGATCAT TAGGGCGATG GGCCTACCTA TTATTGTGGA GTCAGGTGTT
GAAGCTGATG ACGTGATCGG CACATTAGCT GATCAAGCCA GCAAACTGGG GATCCCTACT
CTTATTAGTA CGGGTGATAA AGACATGGCG CAGTTGGTTA ATGAGCACGT AACCCTGATT
AATACGATGA ACAATCATGT GATGGATCCA CAAGGCGTGG TCGAGAAATT TGGCATTCCT
CCAGAATTAG TCATCGATTT TCTCGCTCTA AAAGGCGACA AAGTAGACAA TATTCCTGGC
GTACCAGGTG TAGGCGATAA AAGTGCATTG GGCCTACTTC AAGGTATTGG CAGCATCAAC
GACATATACG AAAACCTTGA TAAAATTGCC TCGTTAGATT TTCGTGGGGC CAAGAAAATG
GCGGACAAGA TGCGCGAATA TGAAGAGCAA GCGCGCTTGT CTTATACATT GGCGACAATC
AAGTTAGATG TGGAAATGGA TTGTAACCCC ACGAGCCTAT CACCCGTCGC GGCTGACTAT
AGTGTATTGA AGGAACTATT CGCAGAACTT GAATTTAAAC GTTGGCTTAA AGATGCAACT
GATGCTTTGA ATAATGGAGC TGAAACAGAA CAAGCAATGT CAGCCAGTGA CGAGCCCTCC
CCTAAATCAG GGGTTCAAGT CACTTACCAA ACAATACTCA CGCAAGACGC ACTTGAAAAA
TGGTTCGCTA AGTTACAACA GGCTGACCTA TTTGCTTTTG ATACAGAAAC CACAAGTTTG
AATTATATGC AGGCTGAATT GGTCGGTATG TCATTTAGTA TTGAAGAGGG CGACGCGGCT
TACCTTCCTT TAGCACATGA TTATGTAGAT GCCCCACAGC AGCTAGATCG CAGTGCAGTT
TTAGCCTTGT TCAAACCTTT ACTAGAAGAC AAAAACAAAG CCAAAGTTGG ACAACATTTA
AAATACGACA AAAACGTACT CGCGAACTAT GACATTAATC TGCAAGGTAT TGCTTACGAC
ACCATGCTTG AGTCATATGT GCTAAACAGT GTCGCAACAC GCCATGATAT GGACAGCTTA
GCGCAGTACT ACTTAGGTTT ATCAACAGTT CATTTTGAGG ATATTGCCGG CAAAGGGGCG
AAACAGCTGA CCTTTAATCA GATTCCATTA GATCAGGCTG CGCAATATGC AGCCGAAGAT
GCCGATATCA CCTTGAGATT GCACAATCAC ATTTGGCAAA AGCTACATCA AACGCCCGAG
CTAGCGTCGG TCCTGACCGA AATAGAAGTA CCTTTAGCGA CCGTGCTGGC TAAAATGGAG
CAGTTTGGCG TATTAATTGA TAGTCAAAAA CTCAGTCAAC AAAGTCAAGA TCTTGCTACG
AGGATCATGC AGCTAGAGCG CGAAGTTCAC GAATTAGCAG GTGAAGAGTT CAACTTGGGT
TCAACGAAGC AATTGCAAGA AATTCTGTTT AATAAACTAA GTCTTCCGGT GTTGAAGAAA
ACGCCTAAAG GCGCCCCCTC TACTTCTGAG GAAGTTTTAC AGGAGTTAGC ACTTACATAC
CCGCTACCTA AATTATTAAT GGAATTTAGA GTGTTAAGTA AGTTGAAGAA CACCTATACA
GATAAGCTTC CTAAGATGAT AAACCCGCGT AGTGGCCGTG TGCATACTTC ATATCATCAA
GCCATCACTG CTACGGGGCG CCTGTCTTCT ACCGAACCCA ATTTGCAGAA TATTCCAATT
AGAACGGAAC AAGGACGCAG AGTAAGGCAA GCGTTTATTG CTCGTCCTGG GTACAAAATA
GTTGCTGCGG ATTACTCCCA AATAGAACTT AGAATTATGG CGCACCTTTC CCAAGATGAA
GGGTTATTGA AGGCCTTTTC TCAAGGTAAA GATATACATA CTGCCACAGC GGCAGAAGTG
TTTAACGTTT CGCTAACGGA AGTGACCACA GAACAGAGAC GCAACGCCAA GGCTATTAAT
TTTGGGTTGA TTTACGGAAT GTCAGCTTTC GGCCTGTCGA AGCAACTCAA TGTATCTCGC
CATGATGCCC AGCATTATAT GGATCTTTAC TTTGAACGTT ATCCTGGCGT GCTTAAGTAC
ATGGAAGACT CCCGTATTGT CGCGAAAGAA AACGGTTATG TATCAACTGT ATTTGGTCGT
CGCCTCTACC TACCTGATAT TAATGCGAGT AATGGGTTGC GCCGCAAAGG CGCAGAAAGA
GCCGCGATTA ACGCCCCTAT GCAAGGCACA GCTGCCGACA TTATTAAAAA AGCTATGTTG
AAAGTGGATG CCTGGATTGA CACGTTACCA AGCGATCAAA CGCGTATGAT AATGCAAGTT
CACGATGAGC TTATTTTTGA AATAAAAGAA CAAAACGTAG AAAATGATAA AAATACTATC
GTTGACCTTA TGGAAAAAGC AGTTTCATTA GACGTACCGC TCATTGTCGA AGCAGGAGTT
GGCGAAAATT GGGACCAAGC TCACTAG
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| Protein sequence | MSNTDPATTP VIPNNPFILV DGSSYLFRAF HGMPPLTNSK GQDTGAIYGV INMLRSLIKQ
FSPTHMAVVF DAKGKTFRDD IYKEYKANRP SMPEELRSQI EPLHKIIRAM GLPIIVESGV
EADDVIGTLA DQASKLGIPT LISTGDKDMA QLVNEHVTLI NTMNNHVMDP QGVVEKFGIP
PELVIDFLAL KGDKVDNIPG VPGVGDKSAL GLLQGIGSIN DIYENLDKIA SLDFRGAKKM
ADKMREYEEQ ARLSYTLATI KLDVEMDCNP TSLSPVAADY SVLKELFAEL EFKRWLKDAT
DALNNGAETE QAMSASDEPS PKSGVQVTYQ TILTQDALEK WFAKLQQADL FAFDTETTSL
NYMQAELVGM SFSIEEGDAA YLPLAHDYVD APQQLDRSAV LALFKPLLED KNKAKVGQHL
KYDKNVLANY DINLQGIAYD TMLESYVLNS VATRHDMDSL AQYYLGLSTV HFEDIAGKGA
KQLTFNQIPL DQAAQYAAED ADITLRLHNH IWQKLHQTPE LASVLTEIEV PLATVLAKME
QFGVLIDSQK LSQQSQDLAT RIMQLEREVH ELAGEEFNLG STKQLQEILF NKLSLPVLKK
TPKGAPSTSE EVLQELALTY PLPKLLMEFR VLSKLKNTYT DKLPKMINPR SGRVHTSYHQ
AITATGRLSS TEPNLQNIPI RTEQGRRVRQ AFIARPGYKI VAADYSQIEL RIMAHLSQDE
GLLKAFSQGK DIHTATAAEV FNVSLTEVTT EQRRNAKAIN FGLIYGMSAF GLSKQLNVSR
HDAQHYMDLY FERYPGVLKY MEDSRIVAKE NGYVSTVFGR RLYLPDINAS NGLRRKGAER
AAINAPMQGT AADIIKKAML KVDAWIDTLP SDQTRMIMQV HDELIFEIKE QNVENDKNTI
VDLMEKAVSL DVPLIVEAGV GENWDQAH
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