| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0005 |
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| Symbol | |
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| ID | 4171830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 6298 |
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| End bp | 6996 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638052999 |
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| Product | aspartate racemase |
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| Protein accession | YP_659592 |
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| Protein GI | 109896337 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1794] Aspartate racemase |
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| TIGRFAM ID | [TIGR00035] aspartate racemase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGAAAA TTGGCATGTT AGGGGGAATG AGTTGGGAAT CAACGGCTCA ATATTATGAG
TTAATTAATC GAGAATTAAA TCGTCGCCTA GGCGGCCTAC ATAGCGCGAG GATAGTGTTA
AATAGCGTAG ACTTCAACGA CATAGAACTA TTACAGAAAG CCGCTGAGTG GTGCAATTTG
GCCGATATGC TTAGTGCAGA CGCGTTGAGT CTGGAACACG CCGGAGTCGA CTTTATTATT
ATTTGTACCA ATACCATGCA CAAAGTAGAG CCTGAGATTG CTGCTGCGAC AAGCATTCCA
ATTTTACATA TTGCTGATGC TACGGGTCAG GTGCTTAAAA AAGATAGGCT TAAGCGAGTG
GGTTTATTAG GCACAGCATT CACAATGGAA CAAGATTTCT ATGAATCCCG CTTAGCAACT
AAATTTGGCA TTGATGTGAT TGTTCCTGAT GATGACGATA GAGCATTTAT TCATAACGTA
ATTTATGATG AATTATGTAA AGGCGTTATC AATGATAAGT CGAGACAAGG CTATTTAAGA
ATTATTGATA AACTCTACGC GAAAGGATGC GAGGGTGTTG TTTTAGGATG TACTGAAATA
CCGATGTTGG TAAATCAGTC GCATACGCAA GTTGCGCTAT ATGACACAAC TAAAATTCAC
GCATTCGCAG CAGTCGATTT AGCGCTGACG AAGGAGTAG
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| Protein sequence | MKKIGMLGGM SWESTAQYYE LINRELNRRL GGLHSARIVL NSVDFNDIEL LQKAAEWCNL
ADMLSADALS LEHAGVDFII ICTNTMHKVE PEIAAATSIP ILHIADATGQ VLKKDRLKRV
GLLGTAFTME QDFYESRLAT KFGIDVIVPD DDDRAFIHNV IYDELCKGVI NDKSRQGYLR
IIDKLYAKGC EGVVLGCTEI PMLVNQSHTQ VALYDTTKIH AFAAVDLALT KE
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