Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_3161 |
Symbol | |
ID | 4114960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | + |
Start bp | 3173805 |
End bp | 3175139 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638037928 |
Product | tetratricopeptide TPR_2 |
Protein accession | YP_645880 |
Protein GI | 108805943 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACACA GGGAGCTGAT CGAGCAGGGC GAGGCGCTCG CGAGCGAGGG CCTCGTGGAG GAGGCCCTGG AGCGCTTCGA GCAGGCGCTG CAGCGGGCCC CGGACGACCC GGAGGTGGTC GAGGCCGTGG GCCGGGCCCT TCTCGGGCTG GGACGCCTGG AGGAGGCCGA GGCCAGCTTT CTGGACGCGC TGGAGATGGA CCCCGGGTGG GTCGCCCCGC GGATGGGGCT GGCGATGGTG GCGATGCGCC GGGACGAGCC CTTCAAGATC GTCCACCACC TGGAGCGGGC CATAGAGGCC GACCCCGAGC AGCCCGACGC CTACGTGGAG CTCGGCCGCT ACTACGGGCT CATGGGGGAG CCGCTGCTGG CCCGGGCCAC CTTCGAGCGG TGGCTGGCCC GGCACCCGGA CGACGCGGAC ATGCTGATAA ACGCCGGGCT CACGCTCTTT GACGCCGGCG ACTACGGCCC GGCGCTGGAG TTCTTCGAGC GGGCGGTGGA GGCGGCGGAA GACGCCGAGC AGCGCCTGGG GGCGCTCACC TTCCGGGCGA ACGCGCTGGA CATGCTCGGC CGCTACGAGG AGGCGGTGGC CGCCTACGAA GGGGTCATAG CCGAGGAAGC GCGGTGGTGG GAGGCCCACG CCAACCTGGG CATCTGCCAC GCCCGGAGCG GGCGCCCGGA GGAGGCGGAG GCGGCCTTCC GGCGCGGGCT CGAGGCATGC CCCGGCTCCC CGGAGATGCG GGACGAGCTG GCCGCCCACC TGCTGGCCTA CGGCGGCGAC CCCCGCGAGG CGCTGGCGCT CGCCGAGGAG GCCGTGGCCC TGGGGAGCGA CGAGATCCGG CACCTCTACA CTTTAGGCGA GGCGCGGCTG GCCAACGGCG ACGAGGAGGG GGCGATGGAC GCCTACCGGA GGGTCCTGGA GCTGGACCCG GAGAACCCGG AGGCCCACCT GGAGCTCGGC ATCCTCCACG ACCGGCGCGG GGAGCGGCAG CGGGCCGAGA AGCACTTCCT GGAGTCGCTC AAAGCCGACC CCTCAAACCC CCGGGCGCTC TACTCCTACG CCAACGTCTA CTACACGTCC GGGGAGCTGG AGACGGCCGA GGAGCTGCTG GCGCGGGCGC TCGCCGCGGA CCCGGGCTAC TCCCCCGCCC TCTCGGCGCT CGCGAGCATC CGGGCCCGGA GGGGGGAGTA CGCCGCCTCG CTGGAATACC TGGAGAAGGC CGTCGAGGCG GGGGAGCGCG ACGTCGAGCA CTTCAAGCGG GCCCTGGAGT TCGCCCCCCT GAGGCAGGAC CCCCGCTTCC GGAGGCTCCT CTCGCGCATG GCCGAGGGGG ACTGA
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Protein sequence | MEHRELIEQG EALASEGLVE EALERFEQAL QRAPDDPEVV EAVGRALLGL GRLEEAEASF LDALEMDPGW VAPRMGLAMV AMRRDEPFKI VHHLERAIEA DPEQPDAYVE LGRYYGLMGE PLLARATFER WLARHPDDAD MLINAGLTLF DAGDYGPALE FFERAVEAAE DAEQRLGALT FRANALDMLG RYEEAVAAYE GVIAEEARWW EAHANLGICH ARSGRPEEAE AAFRRGLEAC PGSPEMRDEL AAHLLAYGGD PREALALAEE AVALGSDEIR HLYTLGEARL ANGDEEGAMD AYRRVLELDP ENPEAHLELG ILHDRRGERQ RAEKHFLESL KADPSNPRAL YSYANVYYTS GELETAEELL ARALAADPGY SPALSALASI RARRGEYAAS LEYLEKAVEA GERDVEHFKR ALEFAPLRQD PRFRRLLSRM AEGD
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