| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3090 |
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| Symbol | |
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| ID | 4114889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 3099621 |
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| End bp | 3101579 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638037857 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_645809 |
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| Protein GI | 108805872 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACGGA TACGCATCCC GGGGCCGGTG AAGGAGCGGG CCACCCGCCC GTTCCTCTGG
CTGCAGCGCA GCTTCCGGCA GTCGCCGCCC GCCTTCCGGC GCGGGGCGGC GATGCTGGTG
GACGCCGCCA TCGTCATGGA GTCCTTTGCG GTGGCGCTGC TGTTCCGGTT CGAGGGGGAC
GTGCAGTGGG AGTTCTGGGT CTCCTTCTGG CCGTTCGCGC TGGCCGGGGC GGCGCTCTTC
GTGCTGCTCC TGCACATAAA CGGCGTCTAC AAGAGCATCC TCCGCTACAC CGGCATCTAC
CAGGGGGTGC GCATCGCGAG CGCCACCTCC ATCGCCACCG GGCTTCTGTT CATCGCCGAC
GTGACCTTCG ACGAGGTGCT CGGCTACTAC CCCGCCCCGC GCTCGGTGGT CCTGGTGGGG
GCGGCGCTGG CGTACATGCA GCTCGTTGCG GTGAGGCTCT ACCCGCGGGT CTTCTACGAG
CTCTCGCTGC GGGAGGTGGG CCGCCGGAAG CGGACCGCCA TCGTGGGGAC GGGAGAGCAG
GGGGTCGCGC TCGCGGGCCA CATCTGGCGC ACGGCGGCGA TGAACACGCA GGTGGTGGGC
TTCGTGAGCG ACAGCCCCTC GGAGGTCGGC AACCACATCG AGGGGGTCCC GGTCGTCGGG
ACCATAGACG GGATCGAGGA GATCATCGCG GGCCACGGCC TGGACCAGGT GATCATCGCG
ACCCCGCAGG CCAGCCGGGA GCAGGTGGAC CGCATCTGGC GCACCTGCGT CCGCTCCCGG
GTCGAGGTGA AGGTGATGCC GGACCTGGGG GAGCTGCTCG CCGAGGGGAC CATCCGCCTG
AGGGAGCTGC AGATAGAGGA CCTCCTGGGC CGCGAGCCGG TGGACATAGA CCTCGAGGCC
CTCTCCGGCT ACATAAACGG CAAGCGGGTA CTCGTCACCG GGGCGGGGGG CTCCATCGGC
AGCGAGCTCT CGCGCCAGAT CTCTCGCCTC GGGCCCGCCA GGCTCGTGCT GATGGACCGC
GACGAGAGCG GGCTCTACTA CCTGGGCGGG GAGCTGCGCC GGGAGGAGTT CAACGCCGCC
GAGCTCGTCG TCGGGGACGT GACCAACCCC GAGCGGGTGG GCTACGTCTT CGAGCGGTTC
CGGCCGCAGC TGGTCTTCCA CGCCGCCGCC TACAAGCACG TCCCCATGAT GGAGCTGCAG
GCCACCGAGG CGATCATCAA CAACGTCTAC GGCACCCTCA ACGTGGCCCG GGCGGCCGGG
GCCTACGGGG CGGAGAAGTT CGTCAACGTC TCCACCGACA AGGCCGTCAA CCCCGCCAAC
GTGATGGGGG CCACCAAGCG GCTCTCGGAG ATGATCGTGC GGGAGATGGC CGGGGTGTAC
CCGGAGACGG TCTACGCCTC GGTGCGCTTC GGCAACGTGC TCGGGAGCCG CGGCTCGGTG
GTGCCGACCT TCCGCCAGCA GATAGAGGCC GGGGGGCCGG TGACGGTGAC GCACCCGGAG
ATGATCCGGT ACTTCATGAC CATCCCGGAG GCGGTCTCCC TGATCCTGCA GGCCGGGGCG
ATGGCCGAAG GATACGCGAC CTACGTGCTG GAGATGGGCC GCCCGGTGCG CATCCTGGAC
CTGGCGCGCA ACATGATCGA GATAATGGGC GCCCCGGACG TCCAGATAAA GTTCGTCGGC
CTGAGGCCCG GCGAGAAGCT GCGGGAGGAG CTCTCGGAGG AGGGCGAGCA GCGGCTGCCC
ACCGGCCACC CGATGGTCTA CCGGCTGGTC TCGGAGAACG AGGGCCCGCC CGGCGGGGGC
GACCTGCAGG AGCTGGTGGA CGCGATGGTC TACGAGGCCA GAAACCAGGA GGCCGAGCGG
GCGGTGCGCC TCCTGCAGCG GGCGGTGCCG AACTACTCGG CCGCAGACCT CCCGGAGGTG
GCCCCCCGGG AGGAGGACGG GCCCTTCTTC TCCTCCTAG
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| Protein sequence | MRRIRIPGPV KERATRPFLW LQRSFRQSPP AFRRGAAMLV DAAIVMESFA VALLFRFEGD
VQWEFWVSFW PFALAGAALF VLLLHINGVY KSILRYTGIY QGVRIASATS IATGLLFIAD
VTFDEVLGYY PAPRSVVLVG AALAYMQLVA VRLYPRVFYE LSLREVGRRK RTAIVGTGEQ
GVALAGHIWR TAAMNTQVVG FVSDSPSEVG NHIEGVPVVG TIDGIEEIIA GHGLDQVIIA
TPQASREQVD RIWRTCVRSR VEVKVMPDLG ELLAEGTIRL RELQIEDLLG REPVDIDLEA
LSGYINGKRV LVTGAGGSIG SELSRQISRL GPARLVLMDR DESGLYYLGG ELRREEFNAA
ELVVGDVTNP ERVGYVFERF RPQLVFHAAA YKHVPMMELQ ATEAIINNVY GTLNVARAAG
AYGAEKFVNV STDKAVNPAN VMGATKRLSE MIVREMAGVY PETVYASVRF GNVLGSRGSV
VPTFRQQIEA GGPVTVTHPE MIRYFMTIPE AVSLILQAGA MAEGYATYVL EMGRPVRILD
LARNMIEIMG APDVQIKFVG LRPGEKLREE LSEEGEQRLP TGHPMVYRLV SENEGPPGGG
DLQELVDAMV YEARNQEAER AVRLLQRAVP NYSAADLPEV APREEDGPFF SS
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