| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3026 |
|---|
| Symbol | |
|---|
| ID | 4115962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 3033161 |
|---|
| End bp | 3034165 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638037796 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_645748 |
|---|
| Protein GI | 108805811 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTGG GAGTTCTGAG ACGTCTTGCT ATCCTCCCGG TAACGGCTTT GCTCGTCGCG
ACCGTCGTCT TTTTCGTGCT GAGGGTGGTG CCGGGAGATG CTTCGGACGT GCTTGCCAGC
CAGGCCACAG ACCCGGACCA GCGGGCGCAG ATCACTCAGG AGCTTGGCCT CGACGAGCCC
CTGTGGAGGC AGTATCTTCT CTTTCTAAGC GGTATGGCAC GCCTCGATCT GGGGATTTCA
TTCTACAGCG GACAGCCGGT AGTTGAGCTG CTCTTTGAAA CCGTCCCGGT AACTATAGAG
CTGGCCGTCG CCTCGGTTTT GGTCATGGTT GGTGTCGGTG TTAGCACGGG GATGATCGCA
GCGGCCTTCC GCAACACTTG GCTTGACGCT GCCGCACGCT TTGTGGCGGT TGTCCTGTTC
TCGATGCCCT GGTTCTGGCT GGGAATATTG CTCATCGTAG TGTTCGGCGT CTACCTCGGA
TGGCTGCCTA CCTTCGGGCG ACTCCCGGCG ACCGTAACCT ATGATCCCAC GACGAACTTT
ATCCTCGTAG ACGCCCTTAT CCAGGGACGA CCTGACTTGA TACTCCCATG GCTGCAGCAC
TTGATACTGC CTGCGGTCAC GGTAGGGCTG ACCACCGCCG GCTTTGTTAC TCAGATAACC
CGGACCTCGT TTATAGAAAC GATGTTCGAA GATTTTGTAC GCACGGCACG GATGAAGGGG
ATGAGCGAGT TCCGGGTGTT CTGGGGACAT ATCTTCCGCA ATGCTGCTCT TCCGATCGTC
ACCATCGTTG GCCTGCAGTT CGGTGCTCTT TTGGGAGGCG CGGTGGTCTC GGAAGCCGTT
TTCTCCTACC CAGGGGTAGG ACGGATGATG GTGAATGCGA TCTTCCAGCG AGACTACCCG
GTGGTGCAGG GGGCTGCTCT GGTCATTGCT TCCCTCTATA TCCTGGTGAA CACGCTGACC
GATATCTCCT ACCTGTATCT GGACCCGAGG TTGAGGAGAT CATGA
|
|---|
| Protein sequence | MNLGVLRRLA ILPVTALLVA TVVFFVLRVV PGDASDVLAS QATDPDQRAQ ITQELGLDEP
LWRQYLLFLS GMARLDLGIS FYSGQPVVEL LFETVPVTIE LAVASVLVMV GVGVSTGMIA
AAFRNTWLDA AARFVAVVLF SMPWFWLGIL LIVVFGVYLG WLPTFGRLPA TVTYDPTTNF
ILVDALIQGR PDLILPWLQH LILPAVTVGL TTAGFVTQIT RTSFIETMFE DFVRTARMKG
MSEFRVFWGH IFRNAALPIV TIVGLQFGAL LGGAVVSEAV FSYPGVGRMM VNAIFQRDYP
VVQGAALVIA SLYILVNTLT DISYLYLDPR LRRS
|
|---|
| |