| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2899 |
|---|
| Symbol | |
|---|
| ID | 4117360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2902069 |
|---|
| End bp | 2902716 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638037670 |
|---|
| Product | peptidase C60, sortase A and B |
|---|
| Protein accession | YP_645622 |
|---|
| Protein GI | 108805685 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000174389 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGA GGAAGCTGGC TTTGATCCTG GGGGCGCTGC TGCTTGCGGC GGCGCTCTCC
GCCTGCGGCT CCCTCATGGG TCAGACCTCC GGCGAGAGCG GGGGCAAGGA GATGCCCCGC
GAGGCCAAGC AGCGGCAGGT GGCTCCGGAG ACGGGGCGGG AGGAGGCGTC CGGGACCGCC
GGGGGCGAGA AGACCATAGC CGAGGTGCCC GAGAGGACCG TGCTCCGGCT CACCGTCCCC
AAGATGGAGC GGGTGAAGAA CGCCAGGATC CCCACCGGCC GGGGCGACGA CGAGGCGCTG
CTCCGGGAGA ACGTCGCCAT ACACCTGCTC TACACCGGCT TCCCCTGGGA GCGGGAGGCC
AACGTCTACA TCGCCGGCCA CCGCCTCGGC TACTCCGGCA CCGACAGCTA CCTCGCCTTC
TACGACATAG ACAAGCTCGA GAAGGGCGAC GAGATCATCC TGCGCGACGC CAACGGCACC
ACCTACACCT ACAAGGTCTT CCGGGTGCTG GTGGTGGACC CGACCGACCT GCACGTGCTC
AACCCCATCC CCGGCAAGAA CATCGTCACG CTGCAGGCCT GCACCCTCCC GGACTACTCC
AAGCGGATCC TGGTGCAGGG CGAGCTGCAG GACGTCGAGC AGGCCTAG
|
|---|
| Protein sequence | MRLRKLALIL GALLLAAALS ACGSLMGQTS GESGGKEMPR EAKQRQVAPE TGREEASGTA
GGEKTIAEVP ERTVLRLTVP KMERVKNARI PTGRGDDEAL LRENVAIHLL YTGFPWEREA
NVYIAGHRLG YSGTDSYLAF YDIDKLEKGD EIILRDANGT TYTYKVFRVL VVDPTDLHVL
NPIPGKNIVT LQACTLPDYS KRILVQGELQ DVEQA
|
|---|
| |