Gene Rxyl_2896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_2896 
Symbol 
ID4117357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand
Start bp2897368 
End bp2899092 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content77% 
IMG OID638037667 
Product2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 
Protein accessionYP_645619 
Protein GI108805682 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 
TIGRFAM ID[TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00112436 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGGGACG GGACGCCTCG GGCTAACCGC CTCTGGGGGA GGCTCCTCGT CGAGGAGCTG 
CTCCGCTGCG GGGTGGGCCT CTTCTGCGTG GCGCCGGGGT CGCGCTCCAC CCCGCTCGTC
GCCGCCATCG CGGAGCACCC GCGGGCCCGC GCCCTCGTCC ACTACGACGA GCGGGGGACG
GCCTTCGCCG CCCTGGGCTA CGCCCGGGCC ACGGGGCGCC CCGCCGCCTG GGTCACCACC
TCCGGCACCG CCGTCGCCAA CGGGCTGCCG GCCGTCGCGG AGGCCGCCAC CGACTGCGTG
CCGATGCTCC TGCTCACCGC CGACCGCCCG CCGGAGCTGC GCCACACCGG GGCGAACCAG
ACCATAGAGC AGCCCGGGAT CTTCGGGGGC TACGCCCGCT GGAGCTTCGA CGTCCCCCCT
CCCGGCCCGG ACCAGGACCC GGCGACGGTC CTCACCACCG TGGACCAGGC CGTCTACCGT
TCCCAACGCC CCCCCGCCGG CCCGGTGCAC CTGAACCTGA TGTTCCGCGA GCCTTTCCTG
CCGCAGCCCG CGCAGCCGGA CGGCCTCCCC GACCTGTGGC CGGGGGACGG CCCCTACACC
CGCTACGCCC GCGCGGCCCC CGTCCCCGAC GAGGCCGAGG TGCGGGAGCT CGCGAGCGCC
CTGGGCGCCG CGGAGCGGGG GGTCGTCGTC GCGGGCAGGC TGCGCTCCCG GAAGCAGGGG
GAGGCCGCCG CGCGCCTCGC CGCCGCCCTG GGCTGGCCGC TCCTCCCGGA CATCTGCTCG
CAGGCGCGCC TCGGGGCCAG GCCTGAGGTC TCCGCCCCCT ACCACGACCT GCTGCTCGCC
GGCGGGCGCT TCCCCGGGGG GCGCGCGCCG GACGCCGTGG TGCGGGTGGG CGGGGTGCCG
GTCTCCAAGC GCCTGCAGCG GTACGTGACC GGCCGGAAGC CCGCGACGTA CGCGGTGGTC
GCCGACCACC CCTTCAGGTC CGACCCGGAG CATTTGGCGA CCCACCGCCT GGAGGCCGAC
GTGGCGGAGC TCTGCGCCGC CCTCGCCGGG CGCGTGAGGC GGGCCGCCGC GCCGGGCTGG
CTCTCGGGGT GGCTGCGGGC CTCCGGGGAG GCCGGGCGGC GGCTGGAGGC GGCGCTCCGG
GAGCGCAAGG GCCTTTCCGA GCCCGGGGTC GCCCGCCTCG TCTCGCGGCT CATCCCGGAG
GATCACGCGC TGGTCGCGGC GAGCAGCATG CCGGTGCGCG ACCTGGACAC CTTCGCCGAC
CCGGAAGGAC CGCCCGTCCC CGTGGCGGCC AACCGGGGGG CGAGCGGGAT CGACGGCACC
GTGGCGACCG CCGCCGGCTT CGCCCGCGGC GCCGGGCGCC CGGTCACGCT GCTCATCGGG
GATCTGGCGC TCCTCCACGA CCTGAACTCG CTCGCCATGC TGCGCGGGCT CCCGGCGGTC
GTGGTGGTTC TCAACAACGA CGGCGGGGGG ATCTTCCACT TCCTCCCCGT GGCGGAGCAC
GGGGGGATCT TCGAGCCCTA CTTCGGAACC CCGCACGGGC TCGGCTTCCG GCAGGCCGCG
GAGATGTTCG GGCTCGGGTA CTCCGGGCCG CGCACCGCCG GGGAGCTCTC CCTCGCTTAC
CAGAGGGCCT GCGCCGAGGG CGGCCCGCAC CTCATCGAGG TGGTGACCGA CCGGCGGGAG
AACCTGGCGC TGCACCGCGA GCTCCTCCGG GGGGCCGCCG GGTGA
 
Protein sequence
MRDGTPRANR LWGRLLVEEL LRCGVGLFCV APGSRSTPLV AAIAEHPRAR ALVHYDERGT 
AFAALGYARA TGRPAAWVTT SGTAVANGLP AVAEAATDCV PMLLLTADRP PELRHTGANQ
TIEQPGIFGG YARWSFDVPP PGPDQDPATV LTTVDQAVYR SQRPPAGPVH LNLMFREPFL
PQPAQPDGLP DLWPGDGPYT RYARAAPVPD EAEVRELASA LGAAERGVVV AGRLRSRKQG
EAAARLAAAL GWPLLPDICS QARLGARPEV SAPYHDLLLA GGRFPGGRAP DAVVRVGGVP
VSKRLQRYVT GRKPATYAVV ADHPFRSDPE HLATHRLEAD VAELCAALAG RVRRAAAPGW
LSGWLRASGE AGRRLEAALR ERKGLSEPGV ARLVSRLIPE DHALVAASSM PVRDLDTFAD
PEGPPVPVAA NRGASGIDGT VATAAGFARG AGRPVTLLIG DLALLHDLNS LAMLRGLPAV
VVVLNNDGGG IFHFLPVAEH GGIFEPYFGT PHGLGFRQAA EMFGLGYSGP RTAGELSLAY
QRACAEGGPH LIEVVTDRRE NLALHRELLR GAAG