| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2896 |
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| Symbol | |
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| ID | 4117357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 2897368 |
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| End bp | 2899092 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 638037667 |
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| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
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| Protein accession | YP_645619 |
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| Protein GI | 108805682 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00112436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGGGACG GGACGCCTCG GGCTAACCGC CTCTGGGGGA GGCTCCTCGT CGAGGAGCTG
CTCCGCTGCG GGGTGGGCCT CTTCTGCGTG GCGCCGGGGT CGCGCTCCAC CCCGCTCGTC
GCCGCCATCG CGGAGCACCC GCGGGCCCGC GCCCTCGTCC ACTACGACGA GCGGGGGACG
GCCTTCGCCG CCCTGGGCTA CGCCCGGGCC ACGGGGCGCC CCGCCGCCTG GGTCACCACC
TCCGGCACCG CCGTCGCCAA CGGGCTGCCG GCCGTCGCGG AGGCCGCCAC CGACTGCGTG
CCGATGCTCC TGCTCACCGC CGACCGCCCG CCGGAGCTGC GCCACACCGG GGCGAACCAG
ACCATAGAGC AGCCCGGGAT CTTCGGGGGC TACGCCCGCT GGAGCTTCGA CGTCCCCCCT
CCCGGCCCGG ACCAGGACCC GGCGACGGTC CTCACCACCG TGGACCAGGC CGTCTACCGT
TCCCAACGCC CCCCCGCCGG CCCGGTGCAC CTGAACCTGA TGTTCCGCGA GCCTTTCCTG
CCGCAGCCCG CGCAGCCGGA CGGCCTCCCC GACCTGTGGC CGGGGGACGG CCCCTACACC
CGCTACGCCC GCGCGGCCCC CGTCCCCGAC GAGGCCGAGG TGCGGGAGCT CGCGAGCGCC
CTGGGCGCCG CGGAGCGGGG GGTCGTCGTC GCGGGCAGGC TGCGCTCCCG GAAGCAGGGG
GAGGCCGCCG CGCGCCTCGC CGCCGCCCTG GGCTGGCCGC TCCTCCCGGA CATCTGCTCG
CAGGCGCGCC TCGGGGCCAG GCCTGAGGTC TCCGCCCCCT ACCACGACCT GCTGCTCGCC
GGCGGGCGCT TCCCCGGGGG GCGCGCGCCG GACGCCGTGG TGCGGGTGGG CGGGGTGCCG
GTCTCCAAGC GCCTGCAGCG GTACGTGACC GGCCGGAAGC CCGCGACGTA CGCGGTGGTC
GCCGACCACC CCTTCAGGTC CGACCCGGAG CATTTGGCGA CCCACCGCCT GGAGGCCGAC
GTGGCGGAGC TCTGCGCCGC CCTCGCCGGG CGCGTGAGGC GGGCCGCCGC GCCGGGCTGG
CTCTCGGGGT GGCTGCGGGC CTCCGGGGAG GCCGGGCGGC GGCTGGAGGC GGCGCTCCGG
GAGCGCAAGG GCCTTTCCGA GCCCGGGGTC GCCCGCCTCG TCTCGCGGCT CATCCCGGAG
GATCACGCGC TGGTCGCGGC GAGCAGCATG CCGGTGCGCG ACCTGGACAC CTTCGCCGAC
CCGGAAGGAC CGCCCGTCCC CGTGGCGGCC AACCGGGGGG CGAGCGGGAT CGACGGCACC
GTGGCGACCG CCGCCGGCTT CGCCCGCGGC GCCGGGCGCC CGGTCACGCT GCTCATCGGG
GATCTGGCGC TCCTCCACGA CCTGAACTCG CTCGCCATGC TGCGCGGGCT CCCGGCGGTC
GTGGTGGTTC TCAACAACGA CGGCGGGGGG ATCTTCCACT TCCTCCCCGT GGCGGAGCAC
GGGGGGATCT TCGAGCCCTA CTTCGGAACC CCGCACGGGC TCGGCTTCCG GCAGGCCGCG
GAGATGTTCG GGCTCGGGTA CTCCGGGCCG CGCACCGCCG GGGAGCTCTC CCTCGCTTAC
CAGAGGGCCT GCGCCGAGGG CGGCCCGCAC CTCATCGAGG TGGTGACCGA CCGGCGGGAG
AACCTGGCGC TGCACCGCGA GCTCCTCCGG GGGGCCGCCG GGTGA
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| Protein sequence | MRDGTPRANR LWGRLLVEEL LRCGVGLFCV APGSRSTPLV AAIAEHPRAR ALVHYDERGT
AFAALGYARA TGRPAAWVTT SGTAVANGLP AVAEAATDCV PMLLLTADRP PELRHTGANQ
TIEQPGIFGG YARWSFDVPP PGPDQDPATV LTTVDQAVYR SQRPPAGPVH LNLMFREPFL
PQPAQPDGLP DLWPGDGPYT RYARAAPVPD EAEVRELASA LGAAERGVVV AGRLRSRKQG
EAAARLAAAL GWPLLPDICS QARLGARPEV SAPYHDLLLA GGRFPGGRAP DAVVRVGGVP
VSKRLQRYVT GRKPATYAVV ADHPFRSDPE HLATHRLEAD VAELCAALAG RVRRAAAPGW
LSGWLRASGE AGRRLEAALR ERKGLSEPGV ARLVSRLIPE DHALVAASSM PVRDLDTFAD
PEGPPVPVAA NRGASGIDGT VATAAGFARG AGRPVTLLIG DLALLHDLNS LAMLRGLPAV
VVVLNNDGGG IFHFLPVAEH GGIFEPYFGT PHGLGFRQAA EMFGLGYSGP RTAGELSLAY
QRACAEGGPH LIEVVTDRRE NLALHRELLR GAAG
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