Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_2783 |
Symbol | |
ID | 4117616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | - |
Start bp | 2793594 |
End bp | 2796899 |
Gene Length | 3306 bp |
Protein Length | 1101 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 638037555 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_645509 |
Protein GI | 108805572 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCCCCGG TCCTGAGGAC CGGGGACGAG CTGGACCGGG TGCTCGAGCG CGTCCTCACG CACGCGCTCA GGATGCTCGG GGCCTCCCAC GGCTACATCC ACCTCGCCGA CTCCCCCGGC GGGGAGGAGC TGCGGATGCG GGTGGCCGCC GGGCACTTCG CCCGGTTCCG GGGCACCCGG CTGCGGCCCG GCGAGGGCGT GGGGGGGACG GTGTGGAAGA CCGGCAGGGC GCTCGTCGTC GAGGACTACG ACGCCTGGGC CGGCCGCCGC AGGGACGTGG AGCCGGGGCT TCTCGGCTCC GTGATGGGCG CCCCGCTCCG TTCCGGCGGC CAGACCGTGG GGGTCATCTC GGTCGCCCGC CCCGAGGGGG GCTTCGGGGA GCGGGAGCTG CAGGTGCTGG TGGAGTGCGC CGAGCTCGCC GCCGTGGCGC TCGAGAACGC CCGGCTCTAC GCCGAGGCCC GCGAGGAGCT CGCGGCGCGC CGCCGGGCGG AGGAGGCGCT CCGCCGCAGC GAGGCGCGGC TGCGGGCCGT GGTGGCGGGC TCGCCGGTCA CCATGTTCGC GCTGGACCCC TCCGGCGTCT TCACGCTCGC CGAGGGGCGC GGGCTGGAGA GGATGGGCCT GCTGCCCGAG GAGGTGGTCG GCCGCTCGGC CTTCGAGGTC ATCGGGGGCG ACCCGCGGCT CGCGGCGGAC CTGCGGCGGG CCCTCGCCGG GGAGTGCCTC GCCTCGGTCG CGGAGTTCGG CGAGGTCGTT CTCGAGCTGC ACCTCTCGCC GCTCCTGCGG GAGGGGCGGG TGGAGGGCGT CATCGGGGTG GCCACCGACG TCACCGGGCG GGTGGCGGCC GAGCGGCGGC TCAGGGAGTC CGAGTCCGAG CTGCGGGCGG TCTTCGCGGC GATGACCGAC GCGGTGCTGG TGCTCGACCG GGAGGGGCGC TACCTGAGGG TCTCCTCCGC GGACCCCTCG CTGCTGTACG CGCCGGCCGA GGGCCGCGTC GGCAAGACCG TGCACGAGGT GCTCCCCAGG GAGCAGGCCC GGCTGTTTAT GGACGCGATC CGGCGGGCCC TGGAGGGCGG GCGGACCATC GGCGTGGAGT ACGAGCTGCC CACCGGGGGC CGGAGCCGGT GGTTCTCGGC GCGGGTCTCC CCGATGCCCG GGGGGCGGGT GGTGTGGGTG GCCCGCGACA TAACCGAGAG AAGGGAGGCC GAGCGGCGGC TCAGGGAGAG CGAGGAGCGC TTCAGGGTGC TCGCGGACGC CGCGCTGGAG GGGCTCGTCA TCAGCGAGCG CGGCAGGATC CTGGAGGTCA ACCGGGCCTA CACCGAGATT CTGGGCTACG AGCCGGAGGA GGTCGTCGGC GCCCCCGTGC TGGGGAGGGT CGTCCCCGAG CACAGGGAGA TAGCCCGGCG CAGGATAGCG GCGGGCTACG ACCGCCCCTA CGAGGTGGAG GCGGTGAGGA AGGACGGCCG GCGGGTGCAC CTGGAGATCC GGGGTCGGCA GGCCACCTAC CGCGGGCGGC GGGTGCGGAT AACCGCCATG CGCGACGTCA CCGAGCGCAA GCGGGCGGAG CGGGAGCTCA GGGAGGCCCA GGAGCAGTAC CGCCGGCTCG TGGAGCAGCT GCCCGCCGTC GTCTACATAG ACCGGCTGGA CGAAACCAGC TCCAACGTCT ACAGCAGCCC GCAGACCGAG AAGATCTTCG GCTACTCGCC GCAGGAGTGG GCCTCGGACC CGGAGATGTT CCCGAGGGTG CTGCACCCGG CCGACCGGGA GAGCGTCCTG GCCGCCCACG CCCGGGCCAA CGCGCGCGGC GAGCCGCTGG AGCTGGAGTA CCGGCTCATC GCCAGGGACG GGCGGGTGGT GTGGGTGCGG GACAGCTCCA TCGTCCTCAG GGACGCCGAG GGGAACCCCA GGTGGCGCCA GGGGCTCATG GTGGACATCA CCGAGCAGAA GAACCTGGAG GCCCGGCTCG TGCACCTGGC CTTCCACGAC CCGCTCACCG GCCTGCCCAA CCGGGCGCTG TTCATGGACC GGCTGGAGCA CGCCCTGGCG CGCGCGGGCC GCAGCGGGGA CGTGCTGGCG GTGCTGTTCA TCGACCTGGA CAACTTCAAG TTCGTCAACG ACTCGCTGGG GCACGAGGCG GGGGACCGGC TGCTCGCCCT GGTGGCCCGC CGCCTGAGCG GGGCGACCCG GCCGGGGGAC ACGGTGGCCC GTCTCGGGGG CGACGAGTTC ACCGTGCTGC TGGAGGGGAT AGCGGACGGC GGCGAGGCCG CCCGCGTCGC CGGGCGGGTC GCGGAGGTGC TGCGCGAGCC CTTCCGGGTG GCGGGCCGGG AGCTGTTCGT GAGCGCGAGC GTGGGGATCT CGGTGAGCAC CGCGGGCTCC GGGAGCGTGG AGGAGCTGAT GCGCGGGGCG GACCTGGCGA TGTACGAGGC CAAGCGGGAG GGGAAGGACC GCTACCGGGT CTTCGACTTC GGGATGAGCC GCACCGCCCA CGACCGGCTG CGGCTGGAGA ACGACCTGCG GCGGGCCGTG GGGAGGGACG AGCTGCGTCT GTACTACCAG CCGGTGGTGC GGCTCGGGGA CGGCCGGGTG GTGGCTTTTG AGGCCCTCCT GCGCTGGGAG CACCCCCGGC GGGGGATCCT CCTCCCCGAC CGCTTCGTCC CGCTGGCGGA GGAGACCGGG ATGATCGTGG GGATCGGGCG CCGGGTGCTG GAGCTGGCGT GCTCCCGGGC GGCCGGGTGG CGGAGGCAGG AACCCTCTCT GGCGGTGAGC GTGAACATCT CGGCCCGGCA GCTGGTGCGC CCGGACTTCG TGGAGGAGGT GGGGCGCATC CTGCAGCGGA CGGGGCTCGA GCCCGAGGGC CTGGTGCTGG AGGTGACGGA GAGCGCGGCG ATGGACGAGC CGGGGGAGGC GGCGCGGGCG CTGCAGCGGC TCAGGGAGCG GGGGGTTCGC CTGGCCCTGG ACGACTTCGG CACCGGCTAC TCCTCGCTCT CCTACCTCAG GCGGCTGCCG GTCTGCTTTC TGAAGATAGA CCGGTCGTTC GTCGAGGGGC TCGGCGGGGA CTCCGGCAGC GGGGTGCTCG TCGGGGGCGT GATCGCGCTC TCCCGCGAGC TGGGCTTCGA GCCGGTGGCC GAGGGGATCG AGACGCCCGG CCAGCTGGAG CGGCTGCTGG AGCTGGGCTG CGAGCTGGGG CAGGGCTACT ACTTCGCCTC CCCGATGCCG GAGGGGGCGG CCGGGGAGCT GGTGCGCAGC GGGGCCCGGC TCGGGGCGGG GTCTACCCTT CTTGCCGCCC GGAGGCGCGG GGCAGATAGA CGGTGA
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Protein sequence | MPPVLRTGDE LDRVLERVLT HALRMLGASH GYIHLADSPG GEELRMRVAA GHFARFRGTR LRPGEGVGGT VWKTGRALVV EDYDAWAGRR RDVEPGLLGS VMGAPLRSGG QTVGVISVAR PEGGFGEREL QVLVECAELA AVALENARLY AEAREELAAR RRAEEALRRS EARLRAVVAG SPVTMFALDP SGVFTLAEGR GLERMGLLPE EVVGRSAFEV IGGDPRLAAD LRRALAGECL ASVAEFGEVV LELHLSPLLR EGRVEGVIGV ATDVTGRVAA ERRLRESESE LRAVFAAMTD AVLVLDREGR YLRVSSADPS LLYAPAEGRV GKTVHEVLPR EQARLFMDAI RRALEGGRTI GVEYELPTGG RSRWFSARVS PMPGGRVVWV ARDITERREA ERRLRESEER FRVLADAALE GLVISERGRI LEVNRAYTEI LGYEPEEVVG APVLGRVVPE HREIARRRIA AGYDRPYEVE AVRKDGRRVH LEIRGRQATY RGRRVRITAM RDVTERKRAE RELREAQEQY RRLVEQLPAV VYIDRLDETS SNVYSSPQTE KIFGYSPQEW ASDPEMFPRV LHPADRESVL AAHARANARG EPLELEYRLI ARDGRVVWVR DSSIVLRDAE GNPRWRQGLM VDITEQKNLE ARLVHLAFHD PLTGLPNRAL FMDRLEHALA RAGRSGDVLA VLFIDLDNFK FVNDSLGHEA GDRLLALVAR RLSGATRPGD TVARLGGDEF TVLLEGIADG GEAARVAGRV AEVLREPFRV AGRELFVSAS VGISVSTAGS GSVEELMRGA DLAMYEAKRE GKDRYRVFDF GMSRTAHDRL RLENDLRRAV GRDELRLYYQ PVVRLGDGRV VAFEALLRWE HPRRGILLPD RFVPLAEETG MIVGIGRRVL ELACSRAAGW RRQEPSLAVS VNISARQLVR PDFVEEVGRI LQRTGLEPEG LVLEVTESAA MDEPGEAARA LQRLRERGVR LALDDFGTGY SSLSYLRRLP VCFLKIDRSF VEGLGGDSGS GVLVGGVIAL SRELGFEPVA EGIETPGQLE RLLELGCELG QGYYFASPMP EGAAGELVRS GARLGAGSTL LAARRRGADR R
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