| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2783 |
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| Symbol | |
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| ID | 4117616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 2793594 |
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| End bp | 2796899 |
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| Gene Length | 3306 bp |
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| Protein Length | 1101 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 638037555 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_645509 |
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| Protein GI | 108805572 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCCCCGG TCCTGAGGAC CGGGGACGAG CTGGACCGGG TGCTCGAGCG CGTCCTCACG
CACGCGCTCA GGATGCTCGG GGCCTCCCAC GGCTACATCC ACCTCGCCGA CTCCCCCGGC
GGGGAGGAGC TGCGGATGCG GGTGGCCGCC GGGCACTTCG CCCGGTTCCG GGGCACCCGG
CTGCGGCCCG GCGAGGGCGT GGGGGGGACG GTGTGGAAGA CCGGCAGGGC GCTCGTCGTC
GAGGACTACG ACGCCTGGGC CGGCCGCCGC AGGGACGTGG AGCCGGGGCT TCTCGGCTCC
GTGATGGGCG CCCCGCTCCG TTCCGGCGGC CAGACCGTGG GGGTCATCTC GGTCGCCCGC
CCCGAGGGGG GCTTCGGGGA GCGGGAGCTG CAGGTGCTGG TGGAGTGCGC CGAGCTCGCC
GCCGTGGCGC TCGAGAACGC CCGGCTCTAC GCCGAGGCCC GCGAGGAGCT CGCGGCGCGC
CGCCGGGCGG AGGAGGCGCT CCGCCGCAGC GAGGCGCGGC TGCGGGCCGT GGTGGCGGGC
TCGCCGGTCA CCATGTTCGC GCTGGACCCC TCCGGCGTCT TCACGCTCGC CGAGGGGCGC
GGGCTGGAGA GGATGGGCCT GCTGCCCGAG GAGGTGGTCG GCCGCTCGGC CTTCGAGGTC
ATCGGGGGCG ACCCGCGGCT CGCGGCGGAC CTGCGGCGGG CCCTCGCCGG GGAGTGCCTC
GCCTCGGTCG CGGAGTTCGG CGAGGTCGTT CTCGAGCTGC ACCTCTCGCC GCTCCTGCGG
GAGGGGCGGG TGGAGGGCGT CATCGGGGTG GCCACCGACG TCACCGGGCG GGTGGCGGCC
GAGCGGCGGC TCAGGGAGTC CGAGTCCGAG CTGCGGGCGG TCTTCGCGGC GATGACCGAC
GCGGTGCTGG TGCTCGACCG GGAGGGGCGC TACCTGAGGG TCTCCTCCGC GGACCCCTCG
CTGCTGTACG CGCCGGCCGA GGGCCGCGTC GGCAAGACCG TGCACGAGGT GCTCCCCAGG
GAGCAGGCCC GGCTGTTTAT GGACGCGATC CGGCGGGCCC TGGAGGGCGG GCGGACCATC
GGCGTGGAGT ACGAGCTGCC CACCGGGGGC CGGAGCCGGT GGTTCTCGGC GCGGGTCTCC
CCGATGCCCG GGGGGCGGGT GGTGTGGGTG GCCCGCGACA TAACCGAGAG AAGGGAGGCC
GAGCGGCGGC TCAGGGAGAG CGAGGAGCGC TTCAGGGTGC TCGCGGACGC CGCGCTGGAG
GGGCTCGTCA TCAGCGAGCG CGGCAGGATC CTGGAGGTCA ACCGGGCCTA CACCGAGATT
CTGGGCTACG AGCCGGAGGA GGTCGTCGGC GCCCCCGTGC TGGGGAGGGT CGTCCCCGAG
CACAGGGAGA TAGCCCGGCG CAGGATAGCG GCGGGCTACG ACCGCCCCTA CGAGGTGGAG
GCGGTGAGGA AGGACGGCCG GCGGGTGCAC CTGGAGATCC GGGGTCGGCA GGCCACCTAC
CGCGGGCGGC GGGTGCGGAT AACCGCCATG CGCGACGTCA CCGAGCGCAA GCGGGCGGAG
CGGGAGCTCA GGGAGGCCCA GGAGCAGTAC CGCCGGCTCG TGGAGCAGCT GCCCGCCGTC
GTCTACATAG ACCGGCTGGA CGAAACCAGC TCCAACGTCT ACAGCAGCCC GCAGACCGAG
AAGATCTTCG GCTACTCGCC GCAGGAGTGG GCCTCGGACC CGGAGATGTT CCCGAGGGTG
CTGCACCCGG CCGACCGGGA GAGCGTCCTG GCCGCCCACG CCCGGGCCAA CGCGCGCGGC
GAGCCGCTGG AGCTGGAGTA CCGGCTCATC GCCAGGGACG GGCGGGTGGT GTGGGTGCGG
GACAGCTCCA TCGTCCTCAG GGACGCCGAG GGGAACCCCA GGTGGCGCCA GGGGCTCATG
GTGGACATCA CCGAGCAGAA GAACCTGGAG GCCCGGCTCG TGCACCTGGC CTTCCACGAC
CCGCTCACCG GCCTGCCCAA CCGGGCGCTG TTCATGGACC GGCTGGAGCA CGCCCTGGCG
CGCGCGGGCC GCAGCGGGGA CGTGCTGGCG GTGCTGTTCA TCGACCTGGA CAACTTCAAG
TTCGTCAACG ACTCGCTGGG GCACGAGGCG GGGGACCGGC TGCTCGCCCT GGTGGCCCGC
CGCCTGAGCG GGGCGACCCG GCCGGGGGAC ACGGTGGCCC GTCTCGGGGG CGACGAGTTC
ACCGTGCTGC TGGAGGGGAT AGCGGACGGC GGCGAGGCCG CCCGCGTCGC CGGGCGGGTC
GCGGAGGTGC TGCGCGAGCC CTTCCGGGTG GCGGGCCGGG AGCTGTTCGT GAGCGCGAGC
GTGGGGATCT CGGTGAGCAC CGCGGGCTCC GGGAGCGTGG AGGAGCTGAT GCGCGGGGCG
GACCTGGCGA TGTACGAGGC CAAGCGGGAG GGGAAGGACC GCTACCGGGT CTTCGACTTC
GGGATGAGCC GCACCGCCCA CGACCGGCTG CGGCTGGAGA ACGACCTGCG GCGGGCCGTG
GGGAGGGACG AGCTGCGTCT GTACTACCAG CCGGTGGTGC GGCTCGGGGA CGGCCGGGTG
GTGGCTTTTG AGGCCCTCCT GCGCTGGGAG CACCCCCGGC GGGGGATCCT CCTCCCCGAC
CGCTTCGTCC CGCTGGCGGA GGAGACCGGG ATGATCGTGG GGATCGGGCG CCGGGTGCTG
GAGCTGGCGT GCTCCCGGGC GGCCGGGTGG CGGAGGCAGG AACCCTCTCT GGCGGTGAGC
GTGAACATCT CGGCCCGGCA GCTGGTGCGC CCGGACTTCG TGGAGGAGGT GGGGCGCATC
CTGCAGCGGA CGGGGCTCGA GCCCGAGGGC CTGGTGCTGG AGGTGACGGA GAGCGCGGCG
ATGGACGAGC CGGGGGAGGC GGCGCGGGCG CTGCAGCGGC TCAGGGAGCG GGGGGTTCGC
CTGGCCCTGG ACGACTTCGG CACCGGCTAC TCCTCGCTCT CCTACCTCAG GCGGCTGCCG
GTCTGCTTTC TGAAGATAGA CCGGTCGTTC GTCGAGGGGC TCGGCGGGGA CTCCGGCAGC
GGGGTGCTCG TCGGGGGCGT GATCGCGCTC TCCCGCGAGC TGGGCTTCGA GCCGGTGGCC
GAGGGGATCG AGACGCCCGG CCAGCTGGAG CGGCTGCTGG AGCTGGGCTG CGAGCTGGGG
CAGGGCTACT ACTTCGCCTC CCCGATGCCG GAGGGGGCGG CCGGGGAGCT GGTGCGCAGC
GGGGCCCGGC TCGGGGCGGG GTCTACCCTT CTTGCCGCCC GGAGGCGCGG GGCAGATAGA
CGGTGA
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| Protein sequence | MPPVLRTGDE LDRVLERVLT HALRMLGASH GYIHLADSPG GEELRMRVAA GHFARFRGTR
LRPGEGVGGT VWKTGRALVV EDYDAWAGRR RDVEPGLLGS VMGAPLRSGG QTVGVISVAR
PEGGFGEREL QVLVECAELA AVALENARLY AEAREELAAR RRAEEALRRS EARLRAVVAG
SPVTMFALDP SGVFTLAEGR GLERMGLLPE EVVGRSAFEV IGGDPRLAAD LRRALAGECL
ASVAEFGEVV LELHLSPLLR EGRVEGVIGV ATDVTGRVAA ERRLRESESE LRAVFAAMTD
AVLVLDREGR YLRVSSADPS LLYAPAEGRV GKTVHEVLPR EQARLFMDAI RRALEGGRTI
GVEYELPTGG RSRWFSARVS PMPGGRVVWV ARDITERREA ERRLRESEER FRVLADAALE
GLVISERGRI LEVNRAYTEI LGYEPEEVVG APVLGRVVPE HREIARRRIA AGYDRPYEVE
AVRKDGRRVH LEIRGRQATY RGRRVRITAM RDVTERKRAE RELREAQEQY RRLVEQLPAV
VYIDRLDETS SNVYSSPQTE KIFGYSPQEW ASDPEMFPRV LHPADRESVL AAHARANARG
EPLELEYRLI ARDGRVVWVR DSSIVLRDAE GNPRWRQGLM VDITEQKNLE ARLVHLAFHD
PLTGLPNRAL FMDRLEHALA RAGRSGDVLA VLFIDLDNFK FVNDSLGHEA GDRLLALVAR
RLSGATRPGD TVARLGGDEF TVLLEGIADG GEAARVAGRV AEVLREPFRV AGRELFVSAS
VGISVSTAGS GSVEELMRGA DLAMYEAKRE GKDRYRVFDF GMSRTAHDRL RLENDLRRAV
GRDELRLYYQ PVVRLGDGRV VAFEALLRWE HPRRGILLPD RFVPLAEETG MIVGIGRRVL
ELACSRAAGW RRQEPSLAVS VNISARQLVR PDFVEEVGRI LQRTGLEPEG LVLEVTESAA
MDEPGEAARA LQRLRERGVR LALDDFGTGY SSLSYLRRLP VCFLKIDRSF VEGLGGDSGS
GVLVGGVIAL SRELGFEPVA EGIETPGQLE RLLELGCELG QGYYFASPMP EGAAGELVRS
GARLGAGSTL LAARRRGADR R
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