| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2663 |
|---|
| Symbol | |
|---|
| ID | 4115144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2675914 |
|---|
| End bp | 2680023 |
|---|
| Gene Length | 4110 bp |
|---|
| Protein Length | 1369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638037438 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_645392 |
|---|
| Protein GI | 108805455 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGCAGCG AAGGGGAAAC GCCGGACGCC CGGGAGAAGC GGCTCCTGGA GTTCTCGCAC
GACGCCGTCC TGGCGCGGGA CGAGGACGGC AGGATCTCTT TCTGGAACCG CTCCGCCGAG
AGGCTCTACG GGTGGAGCAG CTCCGAGGCC CTCGGGCGAA ACGCCCGAGA GCTCCTCAAG
ACCCGCTCCG GGGAGCCGCT CGAGGAGATA GAAGAGCGGG TGCGCAGCGA GGGGGCGTGG
GAGGGCGAGC TCCGCCAGCA CGCCCGGGAC GGGCGTCCGC TCGTCGTGGA GTGCCGGTGG
GTGCGCGCCG GGGCCGGCAA CATCGTCGAG TTCAGCCGCG ACACCGCGGA GCGCCAGAAG
GCGGAGGAGT ATCGCTCCGT GCTGGAGGCC ATAGAGGACG GCTACTTCGA GACCGACCTC
GCCGGCAACC TGACCTTCGC CAACCAGGCC CTCGGCCGGA TCCTCGGCTA CCCCGCCTCG
CGGCTGCTCG GGAAGAACAG CCGGCAATAC ATGGACCGCG AGAACGCCAG AAAGGTCCAC
GAAGCCTTCA AGGAGGTCTA CGCCACGGGA AGGGCCGCCC GCGGCCTCGT ATGGGAGATG
ATCCCGCGCA CCGGAAGCCC GCGCTGCGTG GAGGGCTCCG TGAGCCTCAT CCGGGACGGC
TCCGGCAGGC CCTGCGGCTT CAGGGGCATA CTGCGGGACA TCACCGAGCG GCTGCGGATG
GAGGAGCGCC TGCGCAGCTC CGAGGCGGAG CTGCGGGCCC TGTTCGCCGC CATAGACGAC
ATCGTCCTCA AGCTCGACCG CGAGGGGAGG TGTCTCGACA TAGCCCCGAG CAACCCCTCC
CCGCTCTACC GGCCGGGCCG GGAGATGGTG GGGCGCAACG TGCGCGAGAT CTTCCCGGTC
GACGAGAAGG AGCCCCTCCT GGACTCGGTG CGGCGGGTCC TGCAAACCGG GCGCCCCGCC
GCGATGGAGT GCAGCATGCA GCTCGGCTAC CGGAGGCTCT ACTTCGACGT CTCGATCTCG
CCGGAGGGCG AGGGAGCGGC GGTCCTGGTG GCCCGGGACG TCACCCGCGA GAGGCTCGCC
GAGCAGGAGC TCAGGAGGGC CGAGGAGAGG TACCGCAGGC TCATCGAGCA GATCCCCGGC
ATCGTCTACA CGGAGGACGC GAGGACCGGG GAAACCCTCT ACGACAGCCC GCGGGTGGAG
GAGATACTGG GCTACCCGGC GGACACCTAC CGGAAAGACC CCAACTACTG GCAAAAGATA
ATACACCCCG AGGACAGGGA GCTCCTCCGG GCTCTGGAGG AGCGCGCCTC TAGGGAGGGC
AAGCTGAGCG CCGAGTACCG GGTCTTCGCC GCCGACGGGC GCGTGGTGTG GGTCCGGGAG
GAGGGCGCCC TGATCCCCGG CGAGGAGGGC CGCCCGGACG TCTGGCAGGG GATCATACTG
GACATCACCG AGCGCAAGCG GGCCGAGCAG GCGCTGCACG AGAGCGAGCA GCGCTTCCGG
AGGGCCTTCG ACGACGCCCC CATAGGGATG GCCCTCGTCG GCCTCGACGG GCGCTGGCTG
CAGGCCAACC GCGCCCTGTG CGAGATCGTC GGCTACCCGC GAGAGCGTCT GCTGCAGAAG
ACCTTCCAGG ACATCACCCA CCCCGAAGAC CTCGATGCGG ACCTGGAGCT CCTGCGCAGG
CTGGTGGCCC GGGAGATCCC GGGCTACCAG ATGGAGAAGC GCTACATACA CGCCTCGGGG
CGCATCGTGT GGGTGCTGCT GAGCGTCTCG CTGGTCACCG GCGAGAACGA CGAGCCGCTC
TACGTCATCG CCCAGGTGCA GGACATCACC GAGAGGAAGC GGATAGAGGA GGAGCTCAGG
GAGGCAAAGG AGCAGGCGGA GGCGGCAAGC AGGGCCAAGA GCGAGTTTGT CGCCAACATG
TCCCACGAGA TAAGGACCCC CATGAACGGG GTCATAGGCA TGGCGGAGCT GCTGCTCGAC
ACCCCCCTCA CCCCCGAGCA GCGGGAGTAC GCAAGGACCA TCCGCTCCTC TGGAGAGGCG
CTGCTTGCAA TCCTAAACGA CATCCTGGAC TTCTCCAAGA TAGAGGCGGG CAGGCTCTCC
CTCGAGAGGA TCCCCTTCGA GATACACAAA GAGGTCGAGG AGGTGGTCTC GCTGCTCGCC
CCAAGGGCCC ACGCAAAGGG CCTTGAGCTC ATCTGCTTCA TAGAGCCCGG GGTGCCGCCG
CTAATCAAAG GAGACCCCTT CAGGCTGAGA CAGGTTCTGA CCAACCTCAT AGGCAACGCC
ATAAAGTTCA CCGAGGAGGG AGAGGTGGTG GTAAGCGCCT CTCTCTCGAA GGAGGAGAAG
AAGAAGAGCG CCCCCGCCGG GGAGCGAGGC GGCGAGATAG AGCTGCGCTT CGAGGTGAAA
GACAGCGGCA TAGGCATACA AGAAGAGCAG CAAAAGCACC TCTTCGAAGC CTTCTCGCAG
GCCGACGCCT CGACCACCCG CCGCTACGGG GGCACGGGCC TTGGGCTTGC CATAAGCCGC
CAGCTGGTGG AGATGATGGG AGGAGAGATA GGCCTGAAGA GCAGCCCCAA AGAGGGCTCG
ACCTTCCACT TCAGCGCGCG CTTTGTGTTG CCAGAAGAAG AAGAGGAAAA GAGCCCAAAA
ACACCGCCCG AAGAGGGAGA GGGAGGAGGG GCGCGCAGAA CCCGAGAAGA AGAAGAGCGG
GGGCGCAGGG AGAGCCTTGC CGGGCTGAGG GTTCTTGTGG TGGACGACAA CGCGACGAAC
AGGACCATCC TCTGCAGGCA GCTTGAGGCC TGGAGGATGG AGCCAAAGAG CGTTGGAGGA
GCGCAGGAGG CGATAAGAGA GCTTGAGGCC TCGGGCACCT TCCTTGCCTC CTCTTCTTCC
GGCTACGACC TCGTCATCCT CGACATGCAG ATGCCAGAGA CAGACGGCCT TGAGCTTGCC
CGCAGGATAA AGAGCCGCCT GCAAGAAGAA GAAGAAAAAA GAGGAGGAGC TTTTTCCGCT
TTGCGCCTCA TGCTCCTCAC CTCCATGGAC CCGCAGACAA AAGAGAAGAT CAAAGCCTCA
GGCACAGTAG AAGCCTGCCT GCAAAAGCCC GTGCGCCAGT CCCAGCTCTA TGACGCAATA
GCAACCCTCT TCCAGAAGAA GAAAGAAGAA GAGCGCCCCC TCCCCCTTCC CGCACACCAA
AAAGAAGAGG AAAAAGAAGG AAAAGAGCGC CCCCTCATCC TGCTTGCCGA AGACAACCCC
GTAAACCAGC AGGTAGCCGC AAGCATGCTC AAGAAGCTCG GCTACCGGGT AGAGCTTGCA
CAAAACGGAG AAGAAGCCCT GAAAAAGCTC TTCCCCCCGC CCTCCTCCCC CCCTTCTTCT
TCCGGAAGGG AAGAAGGAGG AGGAAGCCCC AAAAAGAAGT ACGCGGCCGT TCTCATGGAC
ATCCAGATGC CAAAGATGGA CGGGCTTGAG GCAACCCGGC GCATCCGCAG CAAAGAAGAA
GAAGGCGTGC TGCGGCTCCC CCGCACCCCC ATCATCGCCA TGAGCGCCCA CGCCATGCAG
GAAGACAGAG AAAGAGCCCT CAAGGCCGGC ATGGACCACT ACATCTCAAA GCCGGTAAAG
AAAGAGCAGC TAAAAGAAGC CCTCGAGCGC TTTGTTGCCG CCACCGAAGG ACAAAAAGAG
CGCCCCTCGC CCTCCTCCTC CTGTCCGCCC GGCAGAAAGC CCCAGCAGCC CGAAAAAGGA
GGAGAAGGAG CGGCTCTTGA CCCCGATAGC CTCAAGGAGC TCGACGAGCT TGGGGAGGGG
GTCTTCGAGG AGCTCTGCCA GCTCTTTCTC GAGGACGCGC CAAGAAAGCT TGCCGGCATA
AAAGAAGCGC TCAGGCTGGA GGCAAAAGAA GGAGGAGAGA AGGCCACCTC CTCCTCTTCT
TTTGCGCCGC GCGAAGAAGT TGGCAGGCTC TCGCACGCGC TGAAGGGCAG CGCGGCGAGC
CTTGGGGCGA AGCGGCTTGC CGGGCTCTGC CAGCGGCTTG GGGAGGAGGC TGGGGGGGCG
GGGAGCGAGG AGCAGCTGCT TCGGCTCGTT TGGGAGATGG AGCGGGAGCT CGAGAGGGTC
AGGGGCGAGA TAGCGGCGCG GCTCAGCTAG
|
|---|
| Protein sequence | MGSEGETPDA REKRLLEFSH DAVLARDEDG RISFWNRSAE RLYGWSSSEA LGRNARELLK
TRSGEPLEEI EERVRSEGAW EGELRQHARD GRPLVVECRW VRAGAGNIVE FSRDTAERQK
AEEYRSVLEA IEDGYFETDL AGNLTFANQA LGRILGYPAS RLLGKNSRQY MDRENARKVH
EAFKEVYATG RAARGLVWEM IPRTGSPRCV EGSVSLIRDG SGRPCGFRGI LRDITERLRM
EERLRSSEAE LRALFAAIDD IVLKLDREGR CLDIAPSNPS PLYRPGREMV GRNVREIFPV
DEKEPLLDSV RRVLQTGRPA AMECSMQLGY RRLYFDVSIS PEGEGAAVLV ARDVTRERLA
EQELRRAEER YRRLIEQIPG IVYTEDARTG ETLYDSPRVE EILGYPADTY RKDPNYWQKI
IHPEDRELLR ALEERASREG KLSAEYRVFA ADGRVVWVRE EGALIPGEEG RPDVWQGIIL
DITERKRAEQ ALHESEQRFR RAFDDAPIGM ALVGLDGRWL QANRALCEIV GYPRERLLQK
TFQDITHPED LDADLELLRR LVAREIPGYQ MEKRYIHASG RIVWVLLSVS LVTGENDEPL
YVIAQVQDIT ERKRIEEELR EAKEQAEAAS RAKSEFVANM SHEIRTPMNG VIGMAELLLD
TPLTPEQREY ARTIRSSGEA LLAILNDILD FSKIEAGRLS LERIPFEIHK EVEEVVSLLA
PRAHAKGLEL ICFIEPGVPP LIKGDPFRLR QVLTNLIGNA IKFTEEGEVV VSASLSKEEK
KKSAPAGERG GEIELRFEVK DSGIGIQEEQ QKHLFEAFSQ ADASTTRRYG GTGLGLAISR
QLVEMMGGEI GLKSSPKEGS TFHFSARFVL PEEEEEKSPK TPPEEGEGGG ARRTREEEER
GRRESLAGLR VLVVDDNATN RTILCRQLEA WRMEPKSVGG AQEAIRELEA SGTFLASSSS
GYDLVILDMQ MPETDGLELA RRIKSRLQEE EEKRGGAFSA LRLMLLTSMD PQTKEKIKAS
GTVEACLQKP VRQSQLYDAI ATLFQKKKEE ERPLPLPAHQ KEEEKEGKER PLILLAEDNP
VNQQVAASML KKLGYRVELA QNGEEALKKL FPPPSSPPSS SGREEGGGSP KKKYAAVLMD
IQMPKMDGLE ATRRIRSKEE EGVLRLPRTP IIAMSAHAMQ EDRERALKAG MDHYISKPVK
KEQLKEALER FVAATEGQKE RPSPSSSCPP GRKPQQPEKG GEGAALDPDS LKELDELGEG
VFEELCQLFL EDAPRKLAGI KEALRLEAKE GGEKATSSSS FAPREEVGRL SHALKGSAAS
LGAKRLAGLC QRLGEEAGGA GSEEQLLRLV WEMERELERV RGEIAARLS
|
|---|
| |