| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2494 |
|---|
| Symbol | |
|---|
| ID | 4114758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2507596 |
|---|
| End bp | 2508837 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638037272 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_645230 |
|---|
| Protein GI | 108805293 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.207468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTACC AGCTTGTAAA ATACGCGCTC AGCTCCAAAT ACCCGCGCAC GCGAATGTTT
ACTGCAACTG TAGATCTAAA AGATAATTAT GATGTAGTTA TCATTGGAGC TGGTGGGCAT
GGTCTTGCTG CGGCTTACTA TCTAGCTCGT GACTATGATA TCACTAACGT AGCTGTACTT
GAAAAAGACT ATATTGGAGC TGGAGGTACA GGGCGAAACA CCACGATTAT CCGATCTAAT
TATTTAACTC CTGAAGGCGT GCGTTTTTAT GATGAAAGCC TTCGCTTATT TAAAGATCTT
TCCACAGAGT TTGACCTTAA TCTATTCTAT TCTGAACGTG GTCATTTTAC CTTAGCTCAT
AGCGACTCTG CAGTACGCAC TATGCGGTGG CGTGCTGAGG TAAATAAACA TATGGGAGTA
AATAGTGAAT TTGTTAATCC AGATTTCGTG AAGGAAAGTT GTCCGTATAT AGATCTCACA
TGTGGTGGAA ACGCACCAAT TATGGGCGCG CTATATCATC CTCCTGGTGC TATAGCGCGT
CATGATGCTG TAGCGTGGGG ATATGGGGCC GGTGCTGTCA AACGCGGCGT AGAGATCCAC
CAAAATACAG AAGTAGTTGG TATTGATGTT AGAAAAGGCA AAGTAATTGG CGTACGAACA
AACCGAGGTT ATATTCGAAC TTCTAAAATA CTCTCTGCAG TGGCCGGTTG GACTCCGCAG
ATAACAGATA TGGTAGGGAT TCGTACTCCC ATTTATGTAA GACCTCTACA AGCTTGTGTT
TCTGAACCGC TGAAGCCGTT TCTTGACACA ATCATCGTTT CAGGAAGCTT GCATGTTTAC
GTAAGCCAAT CTTCACGTGG TGAGTTAGTT ATGGGTGGAG CTACTGATCC ATACGATCTC
AATATGATGC GGACCTCTTT GGAGTTTACT GAGGGTTTGG CTAGCCATAT GTTGGATCTT
TTCCCATTTT TGTCGGAAGT CAAGATCTTG CGCGTTTGGG CTGGGTTATG TGATATGACC
CCAGATTTTG CACCAATTAT GGGCAAAACC CCAGTTGAAG GGTTCTATCT TGATGCAGGG
TGGGGAACAT GGGGCTTCAA AGCTACGCCG ATTAGCGGCA AAACCATGGC ACATACCATT
GCCAAAGATT GCGAACCCGA CTTGATATAT GCTTTTCGGT TGTCTAGGTT TGAAGATTTT
GAACTAACAG GTGAAAAAGG CGCTGCATCT GTAGGACATT AA
|
|---|
| Protein sequence | MPYQLVKYAL SSKYPRTRMF TATVDLKDNY DVVIIGAGGH GLAAAYYLAR DYDITNVAVL
EKDYIGAGGT GRNTTIIRSN YLTPEGVRFY DESLRLFKDL STEFDLNLFY SERGHFTLAH
SDSAVRTMRW RAEVNKHMGV NSEFVNPDFV KESCPYIDLT CGGNAPIMGA LYHPPGAIAR
HDAVAWGYGA GAVKRGVEIH QNTEVVGIDV RKGKVIGVRT NRGYIRTSKI LSAVAGWTPQ
ITDMVGIRTP IYVRPLQACV SEPLKPFLDT IIVSGSLHVY VSQSSRGELV MGGATDPYDL
NMMRTSLEFT EGLASHMLDL FPFLSEVKIL RVWAGLCDMT PDFAPIMGKT PVEGFYLDAG
WGTWGFKATP ISGKTMAHTI AKDCEPDLIY AFRLSRFEDF ELTGEKGAAS VGH
|
|---|
| |