| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2402 |
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| Symbol | prpD |
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| ID | 4115361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 2413100 |
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| End bp | 2414512 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638037182 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_645142 |
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| Protein GI | 108805205 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.290074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGATA GGGTCATCGA GCGGATCTCG GAGTACGTCT GCACCTACGA GCCGCAGAGC
CCCCTGGCGC GCGAGACGGC CCGCTACTGC CTGATGGACT CCATCGGGTG CGCGCTGCTC
GCGCTGCGCT ACCCGGAGTG CGCCAAGCTG CTGGGCCCCG CGGTGCCGGG TACGGTGGTG
CCGCACGGCT CGCGGGTGCC GGGCACCCCC TACGAGCTCG ACCCCGTGAA GGCCGCCTTC
GACATCGGAT CCGCCATCCG CTGGCTCGAC TACAACGACA CCTGGCTCGC CGCCGAGTGG
GGCCACCCCT CGGACAACCT CGGCGCGATC CTCGCGGTCT CGGACCACCT GAGCCGCAGC
CGGCGGGCGC GGGGCGAGGA GCCCCTCTAC GTGCGCGACG TCCTCTCCGC CGCGATAGAG
GCGCACGAGA TACAGGGGGT CCTCGCGCTC GAGAACGCGT TCAACCGGGT GGGCCTCGAC
CACGTGCTCC TGGTGCGGGT CGCCTCGGCG GCGGTGGCGA CGCGCCTGCT CGGGGGCGGG
CGCGAGGAGG TCGAGAGCGC CGTCTCGGGC GCGTTCATAG ACGGCGGGCC GCTTCGCACC
TACCGCCACG CCCCCAACGT GGGCAGCAGG AAGTCCTGGG CCGCGGGCGA CGCGACGAGC
CGGGGAGTGA GGCTCGCGAT GATGGCCGTC TCCGGCGAGA TGAGCTACCC GAAGGCGCTC
TCCGCCGAGG GGTGGGGCTT TCAGGATGCC CTCTTCGGGG GGAAGGAGAT AGAGCTCGCC
CGCCCGTTCG GCAGCTACGT GATGGAGAAC GTGCTCTTCA AGATCTCCTT CCCCGCCGAG
TTCCACGCCC AGACCGCGGC CGAGGCCGCC CTCCGGCTGC ACCCGGAGGT CAGGGACAGG
CTGGGGGAGA TAGAGCGCGT CGAGATCACC ACCCAGGAGC CTGCGATGAG GATCATCGCC
AAGGAGGGCC CGCTCAACAA CCCCGCCGAC CGCGACCACT GCATCCAGTA CATAACCGCC
GTCGGGCTGA TCTTCGGCGA GATCACCGCC GACTCCTACG AGGACTCCTT CGCGAAAGAC
CCCCGCATAG ACGAGCTCCG GGCGAAGACG ACCGTCGCCG AGGACGAGCG CTACAGCCGG
GACTACCTCG ACCCGGACAA GCGCTCGATC GCCAACGCGG TGCAGGTCTT CTTCCGCGAC
GGCTCCTCGA CGGAGAAGGT CGAGGTGGAG TACCCCATCG GCCACCGCAG GCGGCGGGAG
GAGGGCATCC CGCTGCTGGA GGAGAAGTTC CGCGCCAACG CCGCAACCCG GCTCCCGAAG
AAGAAGCTCT CGGCGCTCAA GGAGCTCTTC TCCGAGCAGG GGCGGCTGGA GGAGACCCCG
GTCGACGAGC TGATGGGCCT GCTCGCGATG TAG
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| Protein sequence | MADRVIERIS EYVCTYEPQS PLARETARYC LMDSIGCALL ALRYPECAKL LGPAVPGTVV
PHGSRVPGTP YELDPVKAAF DIGSAIRWLD YNDTWLAAEW GHPSDNLGAI LAVSDHLSRS
RRARGEEPLY VRDVLSAAIE AHEIQGVLAL ENAFNRVGLD HVLLVRVASA AVATRLLGGG
REEVESAVSG AFIDGGPLRT YRHAPNVGSR KSWAAGDATS RGVRLAMMAV SGEMSYPKAL
SAEGWGFQDA LFGGKEIELA RPFGSYVMEN VLFKISFPAE FHAQTAAEAA LRLHPEVRDR
LGEIERVEIT TQEPAMRIIA KEGPLNNPAD RDHCIQYITA VGLIFGEITA DSYEDSFAKD
PRIDELRAKT TVAEDERYSR DYLDPDKRSI ANAVQVFFRD GSSTEKVEVE YPIGHRRRRE
EGIPLLEEKF RANAATRLPK KKLSALKELF SEQGRLEETP VDELMGLLAM
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