| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2294 |
|---|
| Symbol | |
|---|
| ID | 4117513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2308321 |
|---|
| End bp | 2309397 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638037075 |
|---|
| Product | cell wall hydrolase/autolysin |
|---|
| Protein accession | YP_645035 |
|---|
| Protein GI | 108805098 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase
[COG3409] Putative peptidoglycan-binding domain-containing protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACGC TGAGGAGGGG AGACCGGGGC CGGGAGGTCG TGGACCTGCA GACCCGCCTG
CAGGCGCTCG GCTACGACCT GGGCAACCGG GGCATAGACG GCGTGTTCCG GGAGGAGACC
GAGCTGGCGG TGCGGGCCTT CCAGCAGAGG GTGGGCATCC TGGCCGACGG CCTGGTTGGG
CCGGTGACCT GGAGGGAGCT GGTGGAGGCC GGTTACCGCC CCGGGGGGCG CCTGCTCTAC
CTGCGGCAGC CGCCCTTCAG GGGGGCCGAC GTGATGGAGA TGCAGCGGAT GCTCAACGAC
CTGGGCTTCG ACCCCGGCGC CGTCAACGGC CTCTTCGACG GGCGCACCGC CCGCGCCGTG
CGCGACTTCC AGAAGAACGC GGGGCTCCAG CCCGACGGGG TGGTGGACGG CGCGGTCTTC
AAGACCCTGA GCATCTACGC CGCCCAGACG CTGGGCACGC ACCAGATCCC GGACAAGAAC
GACGGCTTCT TCCCCGAGGA TCTCTTCTCC GGCACGATCG TCATAGACGC GGCCCACGGC
GGGCCGGACC GGGGGCACGT GGCCCCGGGC GGCCTCTCGG AGGCCGACCT CAACCTGGCC
GTGGCCCACG AGCTCGCCCA GATCCTGCCC GCCCGCGAGG TGCTGCTGAC CCGCAGCGAC
GACGAGGAGG TCTCGCAGGC CGACCGGGCC TTTCTGGCCA ACACCTCGGG GGCGAAGATG
ATCGTCTCGC TCCACCACGC CAGCCACCCG AACCCGGCGG CGCGCGGCAC CGCCTCCTTC
TACTTCGAGC GGCTGGGATA CCGGTCCCAC CGGGGCCGGA TGGCGGCCGC CTACCTGCAG
CGCGGGGTGA GCCGGGCCCT GGGGACGAAG GACATCGGGG AGTTCGGCCG CTCGTACGAC
ATCCTGCGCG AGACCAACAT CCCGGCGGTT ATGGTCGAGC TGCTCTACCT CTCCAACCCG
GAGGACCGGC GGCTGGCCAC CGACCGCTAC TACCCGGCCG CGGTGGCCGA GGCGATAACC
AACGCGCTGG AGCAGTACGC GAGCCGGGAC AGGCGGTTCA TCGCCGTCCC CGGCTGA
|
|---|
| Protein sequence | MRTLRRGDRG REVVDLQTRL QALGYDLGNR GIDGVFREET ELAVRAFQQR VGILADGLVG
PVTWRELVEA GYRPGGRLLY LRQPPFRGAD VMEMQRMLND LGFDPGAVNG LFDGRTARAV
RDFQKNAGLQ PDGVVDGAVF KTLSIYAAQT LGTHQIPDKN DGFFPEDLFS GTIVIDAAHG
GPDRGHVAPG GLSEADLNLA VAHELAQILP AREVLLTRSD DEEVSQADRA FLANTSGAKM
IVSLHHASHP NPAARGTASF YFERLGYRSH RGRMAAAYLQ RGVSRALGTK DIGEFGRSYD
ILRETNIPAV MVELLYLSNP EDRRLATDRY YPAAVAEAIT NALEQYASRD RRFIAVPG
|
|---|
| |