| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2279 |
|---|
| Symbol | |
|---|
| ID | 4117499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2290806 |
|---|
| End bp | 2292437 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638037058 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_645021 |
|---|
| Protein GI | 108805084 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACCT ATACCGCACA CCTCGACACG TTCGCCCGTG ACAACCTGCC GCCGCGGGAG
GCGTGGCCGG AGTTCGTCTT CGACCTGCCG GAGCTAAGCT ACCCGGAGCG GCTGAATGCC
GCCGCAGAGC TGCTGGACAA AATGGTCTCC GGGCGGCCCG CCGTACACAC GGACGAGGGA
GCGTGGAGCT ACCGGGATCT GCTGGAGAAG GCGAACAGGA TCTCGCGCGT CCTGACTGAA
GACATGCACC TCGTGCCGGG CAACCGGGTG CTGTTGCGCG CGCCCAACAC GCCCATGCTG
ATAGCGGCCT GGTTCGCCGT GCTCAAAGCG GGCGGTATCG TGGTGGCGAC CATGCCGCTG
CTCCGCAAGC CGGAGCTTCT CAAGATCATC GGCAAGGCGC AGGTGACCCA CGCCCTCACC
GACACCCGCC TCACGGAAGA CCTGGAGGCC GCCCGCGCCG GGCAGCCGGT CCTGGAGAAC
GTCATGACCT TCGGGCCGGG CGGGGAGCTG GAGGAGCGCA TGGCCTCAAA GCCCGCGGAC
TTCGAGACAG TGGAGACCGC CGCCGAGGAC GTCGCGATCA TCGCCTTCAC CTCGGGGACG
ACCGGGGAAC CAAAGGGCTG CATGCACTCC CACCGCGACC TCCTCGCGGT GTGCGACACC
TTCGGCAAGC GCGTCCTGAA AGCGCAGCCG GACGAGGTCT TCACCGGCAC GCCGCCGCTC
GCCTTCACCT ACGGGCTCGG CGGGTACACG CTGTTCCCGA TGCGGGCCGG AGCCTCGGTG
CTGCCCATCG AGAAGCCGGG GCCCGACGCG CTACTGGAGG CCATCGAGAG GCGCGGGGCG
ACCACCATCT TCACCGCGCC GACCGGCTAC CGCGCTCTGC TGGACAGCAT CGGGGAGATA
GACGCCTCCT CCCTCAGAAA GTGCGTCTCG GCGGGAGAGC CCCTGCCCGC CGCTACCTCG
GACGCCTGGT TCGAGAAGAC GGGCGTGAGG ATCATAGACG GCATCGGCTC CACGGAGATG
CTGCACATCT TCATCTCCGC CTCCGGCGAG GACATCCGCC CCGGCTCCAC CGGCAAACCG
GTCCCGGGGT ATCGGGCGAG GGTCGTCGCT GATGACATGA GCCCCCTGCC TCCCGGCGAG
GTCGGCAAGC TCGCGGTGAA GGGACCGACC GGCTGCCGCT ACCTCGCGGA TCCTCGTCAG
GCCGACTACG TCGTGGACGG GTGGAACATA ACCGGCGACT CCTACAGGAT GGACGAAGAC
GGCTACTTCT GGTTCCAGGC GCGCACGGAC GACATGATCA TCTCCGCCGG CTACAACATC
TCCGGCCCCG AGGTCGAGGC GGCTCTCCTG GGCCACCGGG CCGTAAGCGA GTGCGCCGTC
GTCGCTTCCC CCGACGAGGA ACGCGGGAAC ATCGTCAAAG CATTCGTCGT GTTGCGCGAA
GGGGCGAGCG GCGGCCCCGA GCTGGTCAAG GAGCTGCAGG ACTTCGTGAA GGGGCGCATC
GCGCCGTACA AGTACCCGCG GGCCGTGGAG TTCGTGGACG AGCTGCCCAA GACGCAGACC
GGCAAGATCC AACGCTTCAA GCTGCGCGAA CTGGAGAAGG AGCGGGCCGC TCCCCGGGGA
AGCGTCTCCT GA
|
|---|
| Protein sequence | METYTAHLDT FARDNLPPRE AWPEFVFDLP ELSYPERLNA AAELLDKMVS GRPAVHTDEG
AWSYRDLLEK ANRISRVLTE DMHLVPGNRV LLRAPNTPML IAAWFAVLKA GGIVVATMPL
LRKPELLKII GKAQVTHALT DTRLTEDLEA ARAGQPVLEN VMTFGPGGEL EERMASKPAD
FETVETAAED VAIIAFTSGT TGEPKGCMHS HRDLLAVCDT FGKRVLKAQP DEVFTGTPPL
AFTYGLGGYT LFPMRAGASV LPIEKPGPDA LLEAIERRGA TTIFTAPTGY RALLDSIGEI
DASSLRKCVS AGEPLPAATS DAWFEKTGVR IIDGIGSTEM LHIFISASGE DIRPGSTGKP
VPGYRARVVA DDMSPLPPGE VGKLAVKGPT GCRYLADPRQ ADYVVDGWNI TGDSYRMDED
GYFWFQARTD DMIISAGYNI SGPEVEAALL GHRAVSECAV VASPDEERGN IVKAFVVLRE
GASGGPELVK ELQDFVKGRI APYKYPRAVE FVDELPKTQT GKIQRFKLRE LEKERAAPRG
SVS
|
|---|
| |