| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2162 |
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| Symbol | |
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| ID | 4114816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 2177297 |
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| End bp | 2180722 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638036948 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_644918 |
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| Protein GI | 108804981 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.906254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTGTTC GGCCGTTCTT CAACGATTCA AGCTGGAGGA GAGCGAATTT GGTAACCCCC
ATCGTGCGCC GAAAGAGGCA CTCCTACGCC CGTCTGCAGT CCGCTGATGC CCAGCTGCCC
AACCTGATAC AGATACAGCT CAGCTCCTTC CAGAAGTTCA TGGACGAGGG CATCCGGCGG
ACGCTGGAGG ACATCTCCCC CATAGAGGAC TACTCGGGCT CGTATGCGGT GGAGTTCGGC
GAGCACCGCT TTGAGGAGCC TCCGGTCTCC ATAGAGGAGT GCATGTCCAA GGACAAGACC
TACGCCGCTC CTCTGTTCGT GAGGGTCCGC TTCGTGATCA AGGAGACCGG CGAGGTGCGG
GAGCAGGACG TCTTCATGGG CGACTTCCCG CTGATGACCG ACTGGGGCAC CTTCATCATA
AACGGGACCG AGCGGGTGGT CGTCACCCAG CTCGTGCGCT CGCCCGGGGC GTACGTGATG
GAGCCCAAGG ACCCGACCAA GCAGGTGCTC ACGGCGAGCC TCATGCCGCA CCGGGGCTCG
TGGCTGGAGT TCGAGGTGGA GACCAAGGGG TATGTCTCCG TCAGGATCGA CCGCAAGAGG
AAGCTGCCGG TCACGGTGCT GCTGAAGGCG CTGGGCTTTG GGGGACCGGA GGAGATCCTC
GCGCGCTTCG GGAACTCCTG GCTGATCCGC AACACCCTGG AGCGCGACGA CACCACCTCC
CGGGAGGACG CGCTGCTGGA GGTCTTCCGG CGGCAGCGGC CCGGGGAGCC GGTCAACCTG
GAGAACGCGC AGAACCTGGT GGACGGGCTC TTCTTCGACC CCAAGCGCTA CGACCTCTCC
GAGGTGGGGC GCTACAAGGT CAACAAGAAG CTCAGGCTCG ACGTGCCGCG CGACGTCCAC
ACCCTCACCA TCGAGGACAT CGAGGGGCTG CTGCGGCGTT TGCTCGGCAT CGCCGAGGAG
GTCGCCGAGG AGGAGGAGTT CGGCCGGATC AACTACGAGA GGATCCGGCA CAAGCTCGAC
GAGTACGAGC ACTTCGGCAA CCGGCGCCTG AGGACCGTGG GCGAGCTTGT GCAGGAGGCG
TTCCGCATCG GCATGTACCG CATGGAGCGG GTGGTGCGCG AGCGGATGAC CACGCAGGAC
GAGGAGTCCA TCACGCCGCA GACCGTGGTC AACACCAAGC CGGTGGCGAG CGCCATAAAG
GAGTTCTTCG GCTCCTCGCA GCTCTCGCAG TTCATGGACC AGACCAACAC CCTGGCCGGG
CTCTCGCACC GGCGGCGCCT CAACGCGATG GGCGCGGGCG GCCTCAGCCG CGAGCGCGCC
CCGATAGAGG TGCGCGACGT GCACCCGACG CACTACGGGC GGATGTGCCC GATAGAGACG
CCGGAGGGGC CGAACATCGG GCTCATCGGC CAGCTCTCGA CGTTCGCGCG GGTCAACGAG
TACGGCTTCG TGCAGACCCC CTACAGGAAG GTCGAGGACG GGCGGGTCAC CGACGAGGTC
GAGTACCTCT CCGCCGACGA GGAGGAGGAG TACACCATAG CGCAGGCCAA CACGCCGGTG
GATCTGGAGA CGGGCAGGAT CACGGCGGAG ACCGTGCTGG CCCGCAGCCG CGGCGGGGAC
GTGACCACCG TCTCGCCGGA GGAGGTGGAC TACATGGACG TCTCCCCGGT GCAGACCGTC
TCGGTGGCCA CCTCGCTCAT CCCCTTCCTG GAGCACGACG ACGCCAACCG GGCGCTCATG
GGCGCGAACA TGCAGCGCCA GGCGGTGCCG CTGCTACGCA GCGAGGCGCC GTACGTGGGC
ACCGGGATGG AGTTCCGGGC GGCGACCGAC ACCGGCGACG TGCTGCTGGC GCGCAACGCG
GGGACCGTCG AGCGGGTGAC GGCGAGCAGG ATCGTCGTGC GCCGGGAGGA CGGCGGGCTG
GACGAGTACG CCCTGAGGAA GTTCGCGCGT TCCAACCAGG GAACCTGCGT CAACCAGCGG
CCGCTGGTGA AGGAGGGTGA GGAGGTGGAG GCGGGGACCG TGCTCGCCGA CGGCTCCTCC
ACCGACCAGG GCGAGCTCGC GCTGGGGAAG AACCTGCTCG TGGCGTTCAT GCCGTGGGAG
GGGTACAACT TCGAGGACGC CATCATCATC TCCGAGCGGC TCGTCAAGGA GGACGTGCTC
ACCTCCATCC ACATCGAGGA GTACGAGGTG CAGGCCCGCG ACACCAAGCT CGGGCCCGAG
GAGATCACGC GGGACATCCC GCACGCCTCC GACGACGTGC TCATGAACCT GGACGCCGAC
GGCATCATCC GCATCGGGGC CGAGGTCAGC TCCGGGGACG TGCTGGTGGG CAAGGTCACG
CCGAAGGGCG AGAGCGAGCC GACGCCGGAG GAGAAGCTCC TGCGCGCGAT CTTCGGCGAG
AAGGCGCGCG AGGTGAAGGA CTCCTCGCTC AAGGTGCCGC ACGGCGAGGG CGGGGTCGTC
ATAGACGTCA AGCGCTTCAG CCGCGAGGCG GGCGACGACC TGCCGCCCGG GGTCAACGAG
ATGGTGCGCG TGTTCGTGGC GACCAAGCGC AAGATCGCCG AGGGCGACAA GCTCGCCGGG
CGCCACGGCA ACAAGGGCGT CATATCGAAG ATAGTGCCCG AGGAGGACAT GCCGTTCATG
GAGGACGGCA CGCCGGTGGA CGTGATCCTC TCTCCCTTGG GGGTTCCGAG CCGGATGAAC
ATCGGCCAGA TCCTGGAGAC CCACCTCGGG TGGGCCGCCA GCAAGGGGCT CGGGGAGAAC
GGCGGCGAGC CCGTCTTCGT CTCCACGCCC GTCTTCTCCG GCGCCACCGT GGCGGACATC
AACGAGGCCA TAGACAAGGT GCGCCGGAAC GGGGCCGCCG AGGTCGGGAT GAGCGGCGGC
GGCAAGGTGA CGCTCTACGA CGGGCGCACC GGCGAGCCGT TCGAGAACAA GATCACCGTG
GGCTACATGT ACATCCTCAA GCTGCTGCAC CTGGTGGACG ACAAGATCCA CGCCCGCTCC
ACGGGGCCGT ACTCGCTCGT GACGCAGCAG CCGCTCGGCG GCAAGGCCCA GTTCGGGGGC
CAGCGGTTCG GCGAGATGGA GGTGTGGGCG CTCGAGGCCT ACGGCGCGGC GCACACCCTG
CAGGAGCTCC TCACCATAAA GAGCGACGAC AGGGTCGGGC GCGTCAAGAG CTACGAGGCC
ATCGTCAAGG GCGAGAACAT ACCCTCGCCC AGCGTGCCGG CCAGCTTCAA GGTGCTCCTC
AAGGAGATGC AGTCGCTCGG GCTCTCCGTC AAGCCCATCT ACGACGTGGA GGCCGTCTCC
GAGGAGGACC AGGAGCGGCG CGACTGGGAC GAGGCGGCGA GGGCTCTGGG CATCAACATC
AGCCGCGAGG AGCCCCCGGG GCAGCTGGAC GACACACCGG ACACCTTCTC CAGAGGGGGT
ATGTAG
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| Protein sequence | MRVRPFFNDS SWRRANLVTP IVRRKRHSYA RLQSADAQLP NLIQIQLSSF QKFMDEGIRR
TLEDISPIED YSGSYAVEFG EHRFEEPPVS IEECMSKDKT YAAPLFVRVR FVIKETGEVR
EQDVFMGDFP LMTDWGTFII NGTERVVVTQ LVRSPGAYVM EPKDPTKQVL TASLMPHRGS
WLEFEVETKG YVSVRIDRKR KLPVTVLLKA LGFGGPEEIL ARFGNSWLIR NTLERDDTTS
REDALLEVFR RQRPGEPVNL ENAQNLVDGL FFDPKRYDLS EVGRYKVNKK LRLDVPRDVH
TLTIEDIEGL LRRLLGIAEE VAEEEEFGRI NYERIRHKLD EYEHFGNRRL RTVGELVQEA
FRIGMYRMER VVRERMTTQD EESITPQTVV NTKPVASAIK EFFGSSQLSQ FMDQTNTLAG
LSHRRRLNAM GAGGLSRERA PIEVRDVHPT HYGRMCPIET PEGPNIGLIG QLSTFARVNE
YGFVQTPYRK VEDGRVTDEV EYLSADEEEE YTIAQANTPV DLETGRITAE TVLARSRGGD
VTTVSPEEVD YMDVSPVQTV SVATSLIPFL EHDDANRALM GANMQRQAVP LLRSEAPYVG
TGMEFRAATD TGDVLLARNA GTVERVTASR IVVRREDGGL DEYALRKFAR SNQGTCVNQR
PLVKEGEEVE AGTVLADGSS TDQGELALGK NLLVAFMPWE GYNFEDAIII SERLVKEDVL
TSIHIEEYEV QARDTKLGPE EITRDIPHAS DDVLMNLDAD GIIRIGAEVS SGDVLVGKVT
PKGESEPTPE EKLLRAIFGE KAREVKDSSL KVPHGEGGVV IDVKRFSREA GDDLPPGVNE
MVRVFVATKR KIAEGDKLAG RHGNKGVISK IVPEEDMPFM EDGTPVDVIL SPLGVPSRMN
IGQILETHLG WAASKGLGEN GGEPVFVSTP VFSGATVADI NEAIDKVRRN GAAEVGMSGG
GKVTLYDGRT GEPFENKITV GYMYILKLLH LVDDKIHARS TGPYSLVTQQ PLGGKAQFGG
QRFGEMEVWA LEAYGAAHTL QELLTIKSDD RVGRVKSYEA IVKGENIPSP SVPASFKVLL
KEMQSLGLSV KPIYDVEAVS EEDQERRDWD EAARALGINI SREEPPGQLD DTPDTFSRGG
M
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