| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2092 |
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| Symbol | |
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| ID | 4117599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 2119663 |
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| End bp | 2121300 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 638036878 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_644848 |
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| Protein GI | 108804911 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.403433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGGGAAG AGCGCTACAG GGAGCTTTTC CGGTATGCGC CGGAGGGTGT GATCTCGTTG
GACGCCGGAG GGCGGGTGCT GGGGACGAGC GGCTCCCTAC GGGGACTCCT CCCGGAGGAA
CCGTGCGGGG AGCGCCTCCT CCGGCTCGTC CCGCCCGGCG AGCAGGAGAT GGTCTCGCGC
GCCGTGCAGG GCGCGCTCCG GGGCGAGCTG CGGGAGATGG AGATCCCCTG CTCCGGGGGG
CGGAGGCTGC ACCTGACGCT CGTGCCCGCC AGGACCGGCG AAGGGGTCGT GGGCGTCTCC
GTGGTGGTGC GCGACGTGAC CGGCCGGCGG GCCCTGGAGG AGCAGCTCCT GCGCGAGGCG
CTCATGGACC CGCTCACAGG GCTGCTCAAC AGGACCCTCT TTCTCGACCG GCTGGAGCAC
GCCGCGTGCC GGTCCCGGCA CGCGGCGATC GCGCTGCTGT ACATGGACCT CGACGGCTTC
AAGGAGATAA ACGACACCTT CGGGCACGAG GCCGGGGACG AGGTGCTCCG GGAGGTCGCC
CGCAGGCTGC GCTCCGGGCT GCGGCCCGGG GACACGGCGG CCCGGATCGG GGGCGACGAG
TTCGGCATCC TCCTCGAGGA CTCCAGGGCC TCCGAGGCCC TCCGGGTGGC CCGCAGGCTG
CTGGAGGATC TGCGGGAGCC CATCGCGGCC GGAGAGCGTA GGGTTTGCGT GGCGGCCAGC
GTGGGGATAG CCGCCGGACG CGGCGAGGAC CGCGGCGCCC TGCACCTGAT GAGGAGGGCG
GACCTCGCGA TGTACCGGGC CAAGCAGCGG GGCAAGAACC GCTGCGAGGT CTTCGACCCC
GCCGCGACCC CGCAGGCCCT GGAGCGTGCC GGGGTCCGGG AGGCGCTCCA GCAGGCCATG
GACCGGGGAG AGTTCACCGT CCACTACCAG CCCGTCGTCG CGCTGGCGCG GGGCGGGCGA
CCGGTCGCCG TCGAGGCCCT GGCCCGCTGG AGGCACCGGC ACCTGGGCCT GATGCTCCCC
GACCAGTTCA TCCTCTCCGC CGAGCAGACC GGCATGATCG TGCCGCTCGG CCAGCTGGTG
CTGGAGGAGG CGTGCCGGAC CGCGGCGCGC TGGCGGCAGA GCGGCCGCCG GCTGCGGCTC
GGCGTCAACC TCTCCCCCCG GGAGCTGTGG CAGCAGGACC TGCCGGAGAG GGCCGCCGCG
GCGCTCCGGA GGGCGGGCCT CGGCCCCCAG GACCTGCAGC TGGAGCTCGC CGAGAGCGCA
CTGCTGCAGG AGCCGGAGGC CGCCGCCGGC CTCCTGCACA GGCTCGGAAG GCTCGGGATA
GGGGCGGCCA TCGACGACTT CGGCGGCGCC CGCTCCCCGC TCGGCCTCCT CGGGCGCTTT
GCGGCAGACG GCCTCAAGCT CGACCGCTCG TTCGTCCGGG GGCTGGAGAA GAGCCGGGAG
GAGGCGGCGA TCGCGCGGGC GGTCATAGAG CTCGCCCACC GCCTGGGGAT GCAGGTCACC
GCGAAGGGCG TGGAGACGGA GGCGCAGGCG ACCCTGCTGC GCGGCATGGG GTGCGACCTC
GCCCAGGGCC ACCTCTTCTC CCCGCCGCTC CCCGAGCGGG AGCTGGGCCT CCACGCGGGT
GCTACCCCGT CCGTCTAG
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| Protein sequence | MREERYRELF RYAPEGVISL DAGGRVLGTS GSLRGLLPEE PCGERLLRLV PPGEQEMVSR
AVQGALRGEL REMEIPCSGG RRLHLTLVPA RTGEGVVGVS VVVRDVTGRR ALEEQLLREA
LMDPLTGLLN RTLFLDRLEH AACRSRHAAI ALLYMDLDGF KEINDTFGHE AGDEVLREVA
RRLRSGLRPG DTAARIGGDE FGILLEDSRA SEALRVARRL LEDLREPIAA GERRVCVAAS
VGIAAGRGED RGALHLMRRA DLAMYRAKQR GKNRCEVFDP AATPQALERA GVREALQQAM
DRGEFTVHYQ PVVALARGGR PVAVEALARW RHRHLGLMLP DQFILSAEQT GMIVPLGQLV
LEEACRTAAR WRQSGRRLRL GVNLSPRELW QQDLPERAAA ALRRAGLGPQ DLQLELAESA
LLQEPEAAAG LLHRLGRLGI GAAIDDFGGA RSPLGLLGRF AADGLKLDRS FVRGLEKSRE
EAAIARAVIE LAHRLGMQVT AKGVETEAQA TLLRGMGCDL AQGHLFSPPL PERELGLHAG
ATPSV
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