| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2052 |
|---|
| Symbol | |
|---|
| ID | 4115764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2080376 |
|---|
| End bp | 2081947 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638036839 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_644809 |
|---|
| Protein GI | 108804872 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGA AGGTCTACCG CACGGAGCTC ACGCCGGTGA GCTTTCTGCG CCGCAGCGCC
TTTATGTTCC CGGAGAAGAC CGCCGTGGTC TACGGCGACA GGCGCTACAC CTACCGGGAG
TTCGAACGGC GGGTCGACCG GCTCGCCTCC GGCCTGAGGG AGGCGGGCCT GCGCGGGGGC
GACCGGGTGG CGTTCATCTG CCCCAACACC CCGCCGCTGC TCGAGGCCCA CTTTGCGGTC
CCCGCCGCCG GGGGCGTGCT CGTGGCCATA AACACCCGCC TGAGCCCGGA GGAGGTCGGG
TACATCCTCG AGCACTCGGG GGCCCGGTTC GTCTTCGCCG ACGCCGGGCT CGAGCACCTC
GCCTCCGGCG CGGAGGCGCA GCGGGTGCGC ATAGACGACA CCGGGGCGGA GGGCGACCCC
TACGAGGACT TCCTCGCCGC CGCCCCGCCG GAGCCGCCGG AGAGCCCCCT CAAGGACGAG
GAGGAGACCA TCTCCCTCAA CTACACCTCC GGCACCACCG GCAGGCCCAA GGGCGTGATG
TACAGCCACC GGGGGGCGTA CCTCTGCGCC CTCGGCAACG TTATCGAGGC CGGGATGGGC
TACGAGACCC GCTACCTGTG GACCCTCCCC ATGTTCCACT GCAACGGGTG GACCTACCCC
TGGGCCGTAA CGGCGGTGGC CGGGACCCAC GTCTGCCTGC GGCGGGTGGA GCCCGGGCGC
ATCTGGAGGC TCTTCAAAGA GGAGGGCATA ACCCACTACT GCGCCGCCCC CACCGTGCAG
GTCGGGATCA TAAACGACGA GGCGGCGCAC CGGCTGCCGC GCCCGGTGCG GGCCATGATC
GCGGGGGCCC CGCCCTCCCC CACCCTGATA GCCGGCCTCG GCGACCTCAA CATAGACCCG
GTGCACATCT ACGGCCTCAC CGAGACCTAC GGCCCCATCA CCACGAGCGC CCCCCGCAAG
GAGTGGGAGG AGCTGCCGGC GGAGGAGCGG GCCCGCCTGC TGGCCCGCCA GGGCAACGCC
TACGTCACCG CGGACATAGT GCGCGTGGTG GACGAGAACC TGCAGGACGT GCCCCGCGAC
GGGGAGACGA TGGGCGAGAT CGTGATGCGG GGCAACATGG TGATGAAGGG CTACTTCGAG
AACGAGGAGG CCACCCGCGA GGCCTTCGAG GGCGGCTGGT TCCACTCCGG GGACGTGGCC
GTCTGGCACC CCGACGGCTA CGTGGAGATC CGGGACCGCC GCAAGGACAT CATCATCTCC
GGCGGGGAGA ACATCTCCAC CATCGAGGTG GAGCAGGCGG TCGTGAGCCA CCCGGCGGTG
CTGGAGTGCG CGGTGGTCGC CATCCCCGAC GAGAAGTGGG GCGAGCGCCC GAAGGCGTTC
GTGACGCTCA AGAAGGGGCA TAACGCCACG GAGGAGGAGA TCATCGAGCA CTGCAAGGCC
AAGATAGCCC GCTTCAAGGC GCCCTCGGCG GTGGAGTTCG TGGAGGAGCT GCCGAAGACC
TCCACCGGCA AGGTGCAGAA GTTCGTGCTG CGCGAGAAGG AGTGGGCGGG GCAGGAGAAG
CGGGTGCACT GA
|
|---|
| Protein sequence | MGEKVYRTEL TPVSFLRRSA FMFPEKTAVV YGDRRYTYRE FERRVDRLAS GLREAGLRGG
DRVAFICPNT PPLLEAHFAV PAAGGVLVAI NTRLSPEEVG YILEHSGARF VFADAGLEHL
ASGAEAQRVR IDDTGAEGDP YEDFLAAAPP EPPESPLKDE EETISLNYTS GTTGRPKGVM
YSHRGAYLCA LGNVIEAGMG YETRYLWTLP MFHCNGWTYP WAVTAVAGTH VCLRRVEPGR
IWRLFKEEGI THYCAAPTVQ VGIINDEAAH RLPRPVRAMI AGAPPSPTLI AGLGDLNIDP
VHIYGLTETY GPITTSAPRK EWEELPAEER ARLLARQGNA YVTADIVRVV DENLQDVPRD
GETMGEIVMR GNMVMKGYFE NEEATREAFE GGWFHSGDVA VWHPDGYVEI RDRRKDIIIS
GGENISTIEV EQAVVSHPAV LECAVVAIPD EKWGERPKAF VTLKKGHNAT EEEIIEHCKA
KIARFKAPSA VEFVEELPKT STGKVQKFVL REKEWAGQEK RVH
|
|---|
| |