| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2018 |
|---|
| Symbol | |
|---|
| ID | 4115908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2043649 |
|---|
| End bp | 2045085 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638036806 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_644777 |
|---|
| Protein GI | 108804840 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.678584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTGCGCA AGACGTTCGT GCTGGCCGCG GCCTCGGCCC TGCTGACGCT GGCCCTGCCG
GCCCTGGGGC TGGCCCAGGA GGAGGCTCCC CCCGGCAACC GGGAGCTTTC CCTGGCGCTG
GACACCGTGT GGGTGCTCGT GGCGGCGGTG CTGGTCCTGT TTATGCAGGC GGGCTTCGCG
ATGCTCGAGG TCGGGTTCTC CCGCATGAAG AACGTCGGCA GCGTGGTCGC CAAGATCCTC
GCCAACCTCG CCATCGCCGC CGTGCTGTTC TGGGCCGTGG GGTTCGCCGT CGCCTTCGGG
ACCGGCAACG CCCTCTTCGG GACGCAGGGC TGGTTTCTGG CCGTGCCGGA GGGGGCGGTA
GACGAGGTCT ACGCCGGGCT CGCCTGGACG CAGGTGCCGC TCTCGGCCAA GTTCCTCTTC
CAGGTCGCCT TCTGCGCCGT CTCGCTGGCG ATCGTGTGGG GCACGATGCT CGAGCGCACC
AAGTTCGCGG TGTACCTCGT CTTCGCGGTG GTCTTCGCCG GGATCATCTA CCCGATGGTG
GGGCACTGGG TCTGGGGCGG CGGCTGGCTC ACCGAGCTCG GGATGCAGGA CTTCGCCGGC
TCCACGGTCG TCCACCTCTC CGGGGCGATG GCGGCCCTCG CCGGGACGCT CCTTCTGGGC
CCCCGTCTCG GCAAGTACGA CGACGAGGGG CGCCCCGTCA CGATACCGGG ACACAACATG
CCGCTCGCGG TGCTCGGCGT CCTCATACTC TGGATCGGCT GGTACGGCTT CAACCCCGGC
TCCACGATGG CGGCCACCCC CCAGATCGCG GACATCGCCC TCACCACCAC CCTGGCCGCC
GCCTGCGGGG TGCTCGGGGC GATGGCCATG AGCTACCTCT ACCGCCGCCA CGTGGACGTG
GGGATGGCGG GCAACGGGGC CATCGCCGCG CTCGTCGCCA TCACCGCCCC CTGCGCCTTC
GTCGCGCCGT GGGCCTCGGC CATCATCGGC TTCGTCGCCG GCGTGATCAT GTACGCCACC
CTCCTCTTCG TGGACCGCAT CGGGGTAGAC GACCCCCTCG GCGCCATCGC CGCGCACGGC
ATGGGGGGCG TCTGGGGCAC GCTCTCCGCC GGGCTCTTCA CCACCCCCGA GCTCGCGGCC
GTCGGCCGGC CCGGCCTCCT CTACGGCGGC GGGCTCTACC AGCTCGGCGT GCAGGCGCTC
GGCATCCTGG CCGCCGGGGG GTTCGTCTTC CTCGCCTCGC TCCTGGTGTT CGCCGCGCTC
AAGGCGACGA TCGGGCTCAG GGTCAAGCCG GAGCAGGAGC TCAACGGGCT CGACGTGAGC
GAGCACGGCG TCTACGGCTA CGCCGGCTTC CCGGAGCACC TGATCGCCAC GGACCACCCG
GTGAACGGCA ACGGCGGCGG CGCGCCGCGG AATGCCCCGG CAGAGGGGGC GGCCTGA
|
|---|
| Protein sequence | MLRKTFVLAA ASALLTLALP ALGLAQEEAP PGNRELSLAL DTVWVLVAAV LVLFMQAGFA
MLEVGFSRMK NVGSVVAKIL ANLAIAAVLF WAVGFAVAFG TGNALFGTQG WFLAVPEGAV
DEVYAGLAWT QVPLSAKFLF QVAFCAVSLA IVWGTMLERT KFAVYLVFAV VFAGIIYPMV
GHWVWGGGWL TELGMQDFAG STVVHLSGAM AALAGTLLLG PRLGKYDDEG RPVTIPGHNM
PLAVLGVLIL WIGWYGFNPG STMAATPQIA DIALTTTLAA ACGVLGAMAM SYLYRRHVDV
GMAGNGAIAA LVAITAPCAF VAPWASAIIG FVAGVIMYAT LLFVDRIGVD DPLGAIAAHG
MGGVWGTLSA GLFTTPELAA VGRPGLLYGG GLYQLGVQAL GILAAGGFVF LASLLVFAAL
KATIGLRVKP EQELNGLDVS EHGVYGYAGF PEHLIATDHP VNGNGGGAPR NAPAEGAA
|
|---|
| |