| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2001 |
|---|
| Symbol | |
|---|
| ID | 4117589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2021797 |
|---|
| End bp | 2024109 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638036788 |
|---|
| Product | penicillin amidase |
|---|
| Protein accession | YP_644760 |
|---|
| Protein GI | 108804823 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCACCGGG GGCTGCGCTG GGCGGGTTTC GCGGCGGCCG CCCTGGTTGC GCTGCTCGCC
GCCGCCTCCT GCGGCGGCTA CCTCTACCTC AGGCTCTCCA CCTCCCCGCA GACGAACGGC
ACGCTGGAGC TGGAGGGGCT GCGGAGGCCG GCGGAGGTGG TGCGCGAGCC CTCCGGCGTG
GTCCACATAC GGGCGGCCGA CGAGCACGAC CTCTTCTTCG CCCTGGGCGT GGCCCACGCC
CAGGACCGGC TGTGGCAGAT GGAGTTCCAG CGGCGGGTGG GGGCGGGGCG GCTCTCCGAG
GTGCTCGGCC GGGCCGCGCT CGAGCAGGAC CGCTTTCTGC GGACCTTCGG CTTCTACCGG
GCGGCGAGGA GCGCCTACCG GAGCCTGGGC CCGGAGGGGA GGGCCGCCGT GGATGCCTAC
GTCGCGGGGG TGAACGCCTA CCTGCGGACC GACCCCGGGC TGCCGCTGGA GTTCCGGCTG
CTCGGCTACG AGCCCGAGCC CTGGCGCCCG GCCGACGTGC TGGTGTGGGC GAAGATGATG
AGCTTCGACC TCTCGGCCAA CTACGAGTCC GAGCTGGAGC GCTACCGGCT GCGGGCTCGG
GGGCTGGAGC CCCCGCGCAT CGCGGAGCTC ATGCCCCCGT ACCCGGAGGA CGGACCCGTC
ATCCTCCCGG AGGGGGGCGG GGCCTCGCCG CAGGCTGAGC GGCAGGCGGA GGCCCTGCTC
CGGCTGCGGC GCTCGCTCCC CGTCTCGCTC GAGGCCTCCA ACAACTGGGT CGTCTCTGGG
CGGCGCACCG AGAGCGGGGC CCCGCTTTTG GCCAACGACC CCCACCTGGG GCTCGGGGTG
CCCCCGCTCT GGTACCTGGC GCACCTGAAG TCCCCCACGC TCGAGGCCGT GGGGGCCACC
CTGCCGGGCG TGCCCGGGGT GGTCATCGGG CGCAACCGCG ACATAGCCTG GGGGGTGACC
AACGTGGGCG CCGACGTGCA GGACCTCTAT GTCCTGGAGG AGGCCCGGGA CGGGAGGGGC
TACCGCTACA GGGGAGAGGT GCGCCCTTAC CGGGTGCGCG AGGAGAGGAT AGAGGTCGGG
GACGGGGAGG ATGTCACCCT GCGGGTGCGC GAGACGGTCT ACGGGCCGGT CGTCTCCGGC
GTGGTCGACG CCCCGGGGGC CCGCCCGCTC GCCCTCCGCT GGACCAGCCT CGAGCCCGAG
GACCGGACCA TAGAGGCCTT TCTCGGGGTG AACCGGGCCG GAGGCTGGGA GGAGTTCAAC
GAGGCGCTGC GCCTCTACAA GGCGCCGAGC CAGAACTTCG TCTACGCCGA CGAGGAGGGG
AACATCGGGT ACGTGGCGCC GGGGAAGTTC CCGGTGCGGC GGGAGGGGCA CAGCGGGCTC
GCCCCGGTCC CCGGGGACGG CCGTTGGGAC TGGGAGGGGA GCGTGCCGTT CGAGAGCTGG
CCGCGGGCGC TCAACCCCCG GGAGGGCTTC GTGGTGACGG CCAACAACAA GGCCGTGCCC
GACTCCTACC CCTACAGGAT CTCGCTGGAG TGGGCCGAGC CGTACCGGGC CGAGAGGATC
CGGCGGATGA TCCTCTCCGC CGGGAGGCTC GGGGTGAAGG ACATGGTGCG CATCCAGCAG
GACCGGCGCT CGCTGCTCTT CGAGGATTTC CGTCCGGTGC TGGAGGACCT CGGGCCGCTC
GGTCCCCGGG CCCGGCAGTG GCGGGAGCGG CTGCTGCGCT GGGACGGCGA CGCCCGGCCG
GGCTCGCGGG AGGCGGCGCT CTTCGAGGCC TGGTACACGG AGCTGACGCG CCTCCCCGCG
CGGGAGGTGG GCCGGAGGTA CTGGGACGAG CCCCGCTACC TGCTGCGGGC GATGCGGCGC
GGCGACCGCA GCTGCCGGCC CTCGGGCGGC CGCGGGGACT GCCTCCGCTT CGCCGCCCGG
GCCCTGGAGC GGGCGCTCGA GCGCCTGGGC GAGGAGGTGC CCGAGTGGGG CGCCGCGCAC
CGGGCCGTCT TCGAGCACCC GGTGCTCTCC CGGACGCCGC TCGCCCGCTT CGCGGGGAGG
GAGGTGGCCG CCGGGGGCGA CGCCTACACC GTCAACGTGG GGCCCTACGA CCCGGCGAGC
TTCCGGATGG ACTCCGGGCC CAGCTACCGC CAGGTGGTGG ACCTCTCCCC GGAGGGACGC
TCGCTCTACG TGATCCCCAT GGGCCAGTCC GGGAGCCCAC TCTCCGGGCA CTTCGACGAC
CTCCTCGGGC TGTGGAGCGG CGGCGGTTAC CTGCGGATGC GCACCGCCGG GTACGAGGCG
GACGACGCCC TCACCCTGCG TCCGGCCCGC TAG
|
|---|
| Protein sequence | MHRGLRWAGF AAAALVALLA AASCGGYLYL RLSTSPQTNG TLELEGLRRP AEVVREPSGV
VHIRAADEHD LFFALGVAHA QDRLWQMEFQ RRVGAGRLSE VLGRAALEQD RFLRTFGFYR
AARSAYRSLG PEGRAAVDAY VAGVNAYLRT DPGLPLEFRL LGYEPEPWRP ADVLVWAKMM
SFDLSANYES ELERYRLRAR GLEPPRIAEL MPPYPEDGPV ILPEGGGASP QAERQAEALL
RLRRSLPVSL EASNNWVVSG RRTESGAPLL ANDPHLGLGV PPLWYLAHLK SPTLEAVGAT
LPGVPGVVIG RNRDIAWGVT NVGADVQDLY VLEEARDGRG YRYRGEVRPY RVREERIEVG
DGEDVTLRVR ETVYGPVVSG VVDAPGARPL ALRWTSLEPE DRTIEAFLGV NRAGGWEEFN
EALRLYKAPS QNFVYADEEG NIGYVAPGKF PVRREGHSGL APVPGDGRWD WEGSVPFESW
PRALNPREGF VVTANNKAVP DSYPYRISLE WAEPYRAERI RRMILSAGRL GVKDMVRIQQ
DRRSLLFEDF RPVLEDLGPL GPRARQWRER LLRWDGDARP GSREAALFEA WYTELTRLPA
REVGRRYWDE PRYLLRAMRR GDRSCRPSGG RGDCLRFAAR ALERALERLG EEVPEWGAAH
RAVFEHPVLS RTPLARFAGR EVAAGGDAYT VNVGPYDPAS FRMDSGPSYR QVVDLSPEGR
SLYVIPMGQS GSPLSGHFDD LLGLWSGGGY LRMRTAGYEA DDALTLRPAR
|
|---|
| |