| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1978 |
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| Symbol | |
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| ID | 4115731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1999235 |
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| End bp | 2000152 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 78% |
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| IMG OID | 638036764 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_644737 |
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| Protein GI | 108804800 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000417837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGGGC GGCTGGTGCT GGGCACCCGG GGCTCGCCGC TGGCCCTGGC TCAGGCGGAG
GCCTGCGCCG CGGGGCTGCG GGCGGCGGGC TTTGCGGTGG AGCTGCGCCG GATAAGGACC
ACCAGCGACC GGCGTCCCGA CGACCCCCTC TCGGTGATAG ACCAGCGGGA CGTGTTCACC
CGCCAGCTGG ACGAGGCGCT GCTCGCCGGG GAGGTGGACC TCGCCGTCCA CTCCATGAAG
GACGTGCCCA CCGAGGTGCC GGAGGGGATC GTGCTGGCCG CCGTCGCCGG CCGGGCCGAC
CCCTCTGACG CGCTGGTCTC GGAGGGGGGC TGGGGCGTTG ACGGGCTGCC CGAAGGGGCG
CGGGTCGCGA CCTCCAGCCT GCGCCGCCGG GCACAGCTTC TGCACCGCAG GCCGGACCTC
AGGGTGGTCG AGATCCGGGG CAACGTGGAC ACCCGGATCC GCAAGATGCG CGCGGGGGCC
GCGGAGGCGG TGGTGCTGGC CCGGGCCGGG CTCGTGCGGC TGGGGCTCGA GGTGCCCCAC
GCCGTGATCC CGCACGACGT CCTGCTGCCC GCGGTCGGGC AGGGGGCGCT CGCCGTCGCG
GTGCGCCGGG GGGATCCGCG TCTGGAGGAG ATCCGGCGGG CCCTCAACGA CCCGGCCGCC
GAGCGCGAGG TCGCGGCCGA GCGGGCGCTG CTGCGGGCGC TCGAGGGGGG CTGCCGGGTC
CCGGTGGGGG CGCGCGCCGT CGCCGGGGGG CGGGGGGTGC TCCTGCGGGG GGTGGTCGTC
TCCCCCGACG GGGCGGCGCT GTGCGGGGGC GAGGAGCGCG GGGAGGAGCC GGAGGAGGTC
GGGCGGCGGC TGGCCGCGAG GCTCCTCGAG CGCGGGGCCG CCGGTATACT GGGGTTCGTG
CGGGGGGTGA AGCCGTGA
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| Protein sequence | MAGRLVLGTR GSPLALAQAE ACAAGLRAAG FAVELRRIRT TSDRRPDDPL SVIDQRDVFT
RQLDEALLAG EVDLAVHSMK DVPTEVPEGI VLAAVAGRAD PSDALVSEGG WGVDGLPEGA
RVATSSLRRR AQLLHRRPDL RVVEIRGNVD TRIRKMRAGA AEAVVLARAG LVRLGLEVPH
AVIPHDVLLP AVGQGALAVA VRRGDPRLEE IRRALNDPAA EREVAAERAL LRALEGGCRV
PVGARAVAGG RGVLLRGVVV SPDGAALCGG EERGEEPEEV GRRLAARLLE RGAAGILGFV
RGVKP
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